Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq22 134 1e-26 seq3 118 8e-22 >seq22 Length=92557 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 77018 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 77077 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 77078 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 77137 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | ||| || | ||||||| | | Sbjct 77138 ATCTTGGAT--TTGACGTTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCT 77195 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||||| || |||||||||||| Sbjct 77196 TACCGGTCAATGTTTTGACGAAAATTTGCATT 77227 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 76790 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 76849 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 76850 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 76909 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 76910 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 76967 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| || ||||||||||| Sbjct 76968 TACCGGTCAATGTTTTGACGAAAATTTGCAT 76998 >seq3 Length=600384 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 22021 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 21962 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | |||||||||||| || | |||||||| || Sbjct 21961 AATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 21902 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | ||| ||| | |||||| |||| Sbjct 21901 ATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTA 21842 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || || | ||||| ||||| ||||||||| || Sbjct 21841 CCCGTAAGGGTTTTGACAAAGATTTGCATTCTT 21809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343828939565