Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq37 192 5e-44 seq22 105 6e-18 seq3 82.4 7e-11 >seq37 Length=3023111 Score = 192 bits (212), Expect = 5e-44 Identities = 606/924 (66%), Gaps = 29/924 (3%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || |||||||||||| | || || ||| | | |||||||||||| ||| ||| | Sbjct 2626699 GAAGAACCACTTTTGAAGGAAAACAAACGTCGTTATGTCATGTTTCCTATTAGATACCAT 2626758 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | |||||||| ||||| |||||||| || ||||| | |||||| | || Sbjct 2626759 GAAATTTGGCAAATGTACAAGAAGGCTGAAGCATCATTCTGGACTGCAGAAGAAATTGAT 2626818 Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 | ||| ||||| |||||| || | || || ||| || ||| ||| Sbjct 2626819 TTAGGTAAAGATCTTCATGATTGGAGAGAGAAATTGAATGACAATGAAAGGTTTTTCATT 2626878 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 | | ||||| |||||||| || || |||||||||||||| || || ||||| ||| Sbjct 2626879 GGAAGAATCTTGGCCTTTTTCGCTGCCTCTGATGGTATTGTTAATGAAAACTTGGTGGAA 2626938 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | ||||| ||||| ||| | | || || | || ||||| || || ||| | Sbjct 2626939 AACTTTTCTGCTGAAGTTCAAATTCCTGAAGCCAAATCATTTTATGGTTTCCAAATCATG 2626998 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CA 57861 || |||||| | |||||||||| ||||| || | || || || || | ||||| || Sbjct 2626999 ATGGAAAACATTCATTCAGAAACTTATTCATTATTGATTGAAACTTATATCAAGGATCCA 2627058 Query 57862 ACGACGAGAAACG-TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 | | || | || | | ||||| || || ||||| || || || |||||| Sbjct 2627059 A--AGGA-AGCCGATTTCTTATTCAATGCTATTGAAACCATCCCTCAAATTAAAAAGAAG 2627115 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || || ||| | |||| |||||| || || || ||| || ||||| | | Sbjct 2627116 GCTGATTGGGCCATCAGATGGATTCAAGATTCCGATGCATTGTTTGCTGAGAGATTGGTT 2627175 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC-TTTGCGGCAATATTTTGGAT 58039 || || || || || || ||||| || ||| | | | | ||||| | || || ||| | Sbjct 2627176 GCTTTTGCTGCTGTTGAGGGTATCTT-TTTCAGTGGATCGTTTGCTTCCATTTTCTGGTT 2627234 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||| | || | ||||| || |||| ||| ||| || ||||| | || || || Sbjct 2627235 GAAGAAGAGAGGATTAATGCCAGGATTGACCTTTTCCAATGAATTGATTTGTCGTGATGA 2627294 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA--ATAAACC-GAC 58156 ||| | || ||||||||||| ||| | ||| | | |||| || ||| ||| ||| Sbjct 2627295 AGGTTTACACACTGATTTTGCATGCTTGTTGT--TTGCTCATTTACAACATAGACCTGAC 2627352 Query 58157 GCGGGATCGCATCTTGGA--CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | | | | ||| | ||||| || || || || | || ||||| || || | Sbjct 2627353 CC---AAAGATTGTTGAAAGAATTATTACTGAAGCAGTTGAAATTGAAAAAGAATTCTTT 2627409 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 || || || | || || || | || ||||| | | ||||||| | || || Sbjct 2627410 ACTGATGCATTGCCAGTTAGTTTGTTGGGAATGAATTGTAAGTTGATGTGTCAATATGTT 2627469 Query 58275 GAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TTACAACAC 58330 || ||||||||||||||| | ||| | | || |||| | | | |||||| Sbjct 2627470 GAATTTGTTGCCGACAGATTATTGGTTG--CT--TTGGGTAACAAAAAAGTTTACAATGT 2627525 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 | ||||| |||||||||||| | ||||| | | || ||||| || || || || Sbjct 2627526 CACCAATCCATTTGATTTTATGGAGAATATCTCCTTGGCTGGTAAGACCAATTTCTTTGA 2627585 Query 58391 aaaaaaaGTTAGCGAATATCAAAA 58414 ||||| |||| || || ||||| Sbjct 2627586 AAAAAGAGTTTCTGATTACCAAAA 2627609 Score = 143 bits (158), Expect = 2e-29 Identities = 485/750 (65%), Gaps = 14/750 (2%) Strand=Plus/Plus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||||||| |||||| || | |||||| | |||||||| |||| ||| || |||| | Sbjct 2502170 CCTTCTTTCTCGTATTTCTCATACAACTCAACAAATTCGTCACCATAAGTATCAGCCAAG 2502229 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT---CAACGCGTCTC 23353 || | || | ||| | | | |||| | | |||||| |||| | | || Sbjct 2502230 TTTGGAGCTTCATTTGGAGAGAACAATGTCCAA--TCAC-CATTTTGCTCAACTCTTTTC 2502286 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 ||||| | ||| || ||||| | ||| ||||| || | || | | || || || Sbjct 2502287 ATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTCTTCCTTA 2502346 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || ||||||| | | || | ||||| || | || || ||||| || || || || Sbjct 2502347 CCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTCAAGATAT 2502406 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | ||||| || || |||||||| || || || ||||| || ||||| || ||||||||| Sbjct 2502407 AAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGTGTTGTTG 2502466 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAA 23593 | || | | ||| || | | ||| || || | ||| || || | | | Sbjct 2502467 AAAACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGATGTAGGCA 2502526 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | | |||| |||||| | || || || || || || | ||| || |||| Sbjct 2502527 CCAGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGAAATCAAG 2502586 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 || ||| || | |||||| || || || || || || ||||| | || |||||| Sbjct 2502587 GCACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAG 2502646 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 ||||| || |||||||| | ||| || ||| |||| ||||| || | || Sbjct 2502647 AAACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGAACCATGA 2502706 Query 23774 GTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGC----GGCATCAATGTCCTC 23829 |||||||||| | ||||| | |||||| || || || | || || || || Sbjct 2502707 GTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAACTCTTGGGAT--ATCTC--T 2502762 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 ||| || ||||| || || || | ||| |||| || ||| ||||| || | || Sbjct 2502763 TCCATGGATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTCAGCAACTTTTCC 2502822 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 ||||| |||| |||||| | | || ||||| |||||||| || | ||||| || Sbjct 2502823 ATTAATACGTAACAAATATGATCTCTCCAAAGTTTTGAATCCAAAGTAATTGTAGTTGAA 2502882 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||||| || | || || || || || || Sbjct 2502883 ATCACGGTCATAAACAATTGCTGAGTTTAA 2502912 Score = 100 bits (110), Expect = 3e-16 Identities = 212/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Plus Query 22432 CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTG 22491 ||||||||| | || | | || || | ||||||||| || | ||| || | | Sbjct 2501359 CAAATCTTTCAACAAGTATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGA 2501418 Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 |||||| || || ||| | || |||||| |||||||||| |||| || || | || || Sbjct 2501419 GTAAATATTTGAAGTGTATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGA 2501478 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTAC 22610 ||| || ||||| || |||| || | |||||||||| ||||| || | || ||| | Sbjct 2501479 AGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTC 2501538 Query 22611 TCTTGAG-CATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 | | | |||| ||| ||||||| || | ||| | ||| ||||| |||||| Sbjct 2501539 TTTCAATTCATC--CCAATCCCACAATTCAGTTGGCTTTC---TGTTCCACAAGTCGTAT 2501593 Query 22670 TGCAACACGCC--GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCG 22727 ||||||| || |||| || || ||||| ||| ||||| || ||||| | | || Sbjct 2501594 TGCAACAAACCTTGCGA--TGCTGGTGAGCCTTGGTAAGTTTCATAGGGACCTTCTTCCG 2501651 Query 22728 CGGCAAGTTC 22737 | || | ||| Sbjct 2501652 CCGCTAATTC 2501661 >seq22 Length=92557 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || || || |||||| | || |||||| | || Sbjct 76998 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 76939 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||||| ||||| | || || || || Sbjct 76938 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 76879 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || ||| || ||| || ||| Sbjct 76878 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 76819 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||||| || | || |||| | ||| |||| || ||| Sbjct 76818 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGT 76771 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || || || |||||| | || ||||| | || Sbjct 77226 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCATCA 77167 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||||| ||||| | || || || || Sbjct 77166 GACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77107 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || ||| || ||| || ||| Sbjct 77106 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 77047 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || | || |||| | ||| |||| || |||| Sbjct 77046 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTA 76998 >seq3 Length=600384 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || || ||||| ||||| | || ||||| | || Sbjct 21813 ATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATCT 21872 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || || || Sbjct 21873 GACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 21932 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| |||||||| || ||| || ||| || ||| Sbjct 21933 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 21992 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 21993 ATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 22040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766193833040