Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq37 343 2e-89 >seq37 Length=3023111 Score = 343 bits (380), Expect = 2e-89 Identities = 1221/1901 (64%), Gaps = 54/1901 (3%) Strand=Plus/Plus Query 62042 CAATG-TGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 62100 ||||| |||| || || | ||| || || | || ||| | | |||||||| || || | Sbjct 2501037 CAATGGTGAACTGGATAGCAGCAGAAGCAGCTTGCGTCCTCAAGTAGTACATACCTGTCT 2501096 Query 62101 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 62160 ||| || ||||||| ||||| ||||| || || | ||| | |||||| Sbjct 2501097 TTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAATTTACCCATGGTTGGATCTT 2501156 Query 62161 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62220 || || || || | ||||| ||| |||||||| || | || || | |||||| | Sbjct 2501157 TGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCAGCTCTATCAGAAGCCATAT 2501216 Query 62221 TTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 62280 || || |||||| | |||||||||| |||||| || | | ||| || || |||| Sbjct 2501217 CAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTACAATGCCTTGATTTCGTCTG 2501276 Query 62281 GAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 62337 ||| ||||| | |||||||| ||| | | ||||| ||| |||| || | | Sbjct 2501277 GAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATAATGCTACTCTTCATAGCGT 2501336 Query 62338 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATT 62397 ||||||| | | | || ||| || | | | | || ||||| | ||| || | Sbjct 2501337 CATTCCAAATTCCTAAATCAACCAAATCTTTCAACAAGTATGGATTAACAATTTGAAACT 2501396 Query 62398 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62457 | |||| ||| ||||| | || ||||||||| || || || || | | ||||| | Sbjct 2501397 CACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTGTATGGCTCGAAACATTCATTGT 2501456 Query 62458 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 | ||||||||||| | || || ||||| ||||| || |||||||| || ||||| | Sbjct 2501457 TACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCA 2501516 Query 62518 GACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG----- 62572 ||||| | | | || ||||| | | ||||||| ||| | || | || Sbjct 2501517 TACCGTGTTTGGCAAGCTTTTCTTTCAATTCATCCCAATCCCACAATTCAGTTGGCTTTC 2501576 Query 62573 --TACAACANNNNNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTAC 62626 | | ||| ||||| | | ||| | | |||| | | ||| Sbjct 2501577 TGTTCCACAAGTCG-------TATTGCAACAAACCTTGCGATGCTGGTG----AGCCTTG 2501625 Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAATGCACCG 62684 || || ||||| || ||||| | | | |||| || ||| | || || | ||| | Sbjct 2501626 GTAAGTTTCATAGGGACCTTCTTCCGCCGCTAATT--CAATTGATGCTTCAACAGCAGCA 2501683 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG-G 62743 | ||| || |||||||| || | |||| | || ||||| || ||||||| | Sbjct 2501684 TGATAGATTGTTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAATCAAATCCG 2501743 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 || | || | ||||| || || || || ||||| ||||| | | || ||||| || Sbjct 2501744 ATTCTCAAA-ACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAATTGGTCTGTG 2501802 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 |||| | || || | |||||||| |||| || || || || ||| || | | |||| Sbjct 2501803 TCTCATGTTTGATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAATGACTCTATT 2501862 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 | ||| | || |||||| || || | || ||| ||| | | | ||| Sbjct 2501863 CAAATTACGTGTAACAACTTTGGTGACGTCATGCAACTTGTCAAAGTTGTACCAAGCATG 2501922 Query 62924 TATTACAAACATGTTCAAT-------------GCAACAGATGCCAGATTACACACGGCTA 62970 |||| | | || ||||| |||| || |||| ||||| || || | Sbjct 2501923 C-TTACCATCCTGCTCAATAAAAGAAGGTAAAGCAATCGAAGCCAAGTTACAAACAGCAA 2501981 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 | |||| | ||| ||||| | || ||| || | || | | || ||| | Sbjct 2501982 CTTCATCTGGTGCCGAATATTCAACAATTTCACAACACAAGTTGGAAGATTTAATAACAC 2502041 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | ||||||| ||| || ||| ||||||| |||||||| || | |||||||| |||| Sbjct 2502042 CCAAATTTTTTTGGTTGGACTTGGTGTTACAAGCATCCTTGTACAACATGAATGGGGTAC 2502101 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 |||| ||| | || | || | || | | ||| | | |||| || ||| | || Sbjct 2502102 CAGTCTCAGTTTGTGCCTCCAAGATGGAATACCACAATTTTTGAGCTTTGATTGTT--TT 2502159 Query 63151 TGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 | || | | | |||| | |||||| |||||| | || ||||| || || Sbjct 2502160 TCTACCACGACCTTCTTTCTCGTATTTCTCATACAACTCAACAAATTCGTCACCATAAGT 2502219 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 || |||| | ||| ||||| ||| | | ||| | ||| || || | | || || Sbjct 2502220 ATCAGCCAAGTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATCACCATTTTGCTCAAC 2502279 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || ||||||||| | ||| || ||||| | |||| || | ||||| | |||| ||| Sbjct 2502280 TCTTTTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTC 2502339 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 || || || |||||| ||| || | ||| | | ||||||| ||||| ||||| Sbjct 2502340 TTCCTTACCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTC 2502399 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 | |||| || | | | || || | ||||| || || ||||| | || | ||| || Sbjct 2502400 AAGATATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGT 2502459 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| || |||| | | ||||||||||||||| ||||| |||| |||||||| | ||| Sbjct 2502460 GTTGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGAT 2502519 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||| | ||| ||| |||||| || || | || || || || || |||| || Sbjct 2502520 GTAGGCACCAGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGA 2502579 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || || || ||| ||||| |||||||| || ||||| || ||| || |||| Sbjct 2502580 AATCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGC 2502639 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 || | ||||| |||||||| | | ||| || ||||| || || ||||| Sbjct 2502640 AACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGA 2502699 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 | | || ||||| || ||| ||| | | |||||| ||||||||| || ||||| Sbjct 2502700 ACCATGAGTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAACTCTTGGGATATC 2502759 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | | ||| || || | || || | ||| | || ||| || ||||||||| ||| ||| Sbjct 2502760 TCTTCCATGGATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTCAGCAACTTT 2502819 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 63866 || || ||||| || ||| | ||||||||||| || ||||| || ||||| | Sbjct 2502820 TCCATTAATACGTAACAAATATGATCTCTCCAAAGTTTTGAATCCAAAGTAATTGTAGTT 2502879 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 |||| || || || |||| ||| | || || | || ||| Sbjct 2502880 GAAA--TCACGGTCATAAACAATTGCTGAGTTTAACTCATC 2502918 Score = 320 bits (354), Expect = 2e-82 Identities = 605/880 (69%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| || | |||||| || ||||| || || || |||| || ||||| Sbjct 2627609 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2627550 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| |||||||| |||||||| |||||||||| |||||| ||||| || | Sbjct 2627549 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAAT 2627490 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||| || || || ||||| | |||| ||||| | |||||||||||| | | Sbjct 2627489 AATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAAA 2627430 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||||||| | || |||||| ||||||| |||||| || || | || ||||| Sbjct 2627429 CTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAATT 2627370 Query 33531 AATCTAACGGTTTCTTCACTC-GGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | ||| | | || || ||| |||| |||||| ||||| ||| ||||| || Sbjct 2627369 CTTTCAACAATCT-TTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGCAAA 2627311 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| | ||| || || | || ||| ||||| || ||||| || | ||| ||||| Sbjct 2627310 ATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGGCAT 2627251 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || | ||| || | ||| || |||||||| || ||||| || ||||| || || Sbjct 2627250 TAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACCCTC 2627191 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCA-C 33764 || |||||||| |||| | |||||| || ||| | || || || ||||| | Sbjct 2627190 AACAGCAGCAAAAGCAACCAATCTCTCAGCA-AACAATGCATCGGAATCTTGAATCCATC 2627132 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 | || |||||||| ||||||||||| | ||| || ||||| || ||||| || | Sbjct 2627131 TGATG-GCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATAAG 2627073 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 | | ||| || ||| || | |||||| || ||||| | ||| |||| ||| Sbjct 2627072 AAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCTGAA 2627013 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 ||||||||||| || || || || || || || || | || || | ||| || ||| Sbjct 2627012 TGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGAACT 2626953 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 || | | |||| ||| | || |||||||| || || |||||| ||| || ||||| Sbjct 2626952 TCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAAAAG 2626893 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT---TCCAATCATT 34060 ||||| | | || ||| | |||| | || || | ||| | ||||||||| Sbjct 2626892 GCCAAGATTCTTCCAATGAAAAACCTTTCAT-TGTCATTCAATTTCTCTCTCCAATCATG 2626834 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | ||||||| || ||| | |||||| | ||||| |||||||| || ||||| || || Sbjct 2626833 AAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTGTA 2626774 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 ||| | ||| || ||||| ||| || || || || ||| Sbjct 2626773 CATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACA 2626734 Score = 100 bits (110), Expect = 4e-16 Identities = 417/643 (65%), Gaps = 24/643 (4%) Strand=Plus/Minus Query 63229 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63288 |||| ||| | | ||| ||||| || ||| | ||| |||| || |||||| | ||||| Sbjct 920548 CATCGGGAGAAAACAAAGACCAATCACCGCCGGACTTTACTCTTTGCATAAACAAATCAG 920489 Query 63289 GAATCCAAAGAGCTAT-AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347 ||||||| | | | || ||| | ||| || || | | || ||||| || ||||||| Sbjct 920488 GAATCCACA-ACCCATAAAACAAATCCCTCGTACGAAACTCTTCGTTCCCATGATTCTTT 920430 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 | | | | | | | | | ||| | |||||| || |||||||| || || | | || Sbjct 920429 CTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGGCTCCAAGTAGATAGCGAAAGCT 920370 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || || | |||| ||| || || || | |||| || ||||| || | |||| ||| Sbjct 920369 CCTGGTCTTTTGCCTCCACCTTGGTCAACATATCGGGCAGTGTTGTTGAATACTCGTAAC 920310 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT---AGCCTCCACTGGCA 63524 || |||| | || || | | |||||||| | || |||| ||||| ||| Sbjct 920309 ATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGGCTATATGCGAGCCT---TGGGCC 920253 Query 63525 CGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG-CGCATC 63582 | |||||| ||| ||| | || || || || | |||||| ||||| | ||| || Sbjct 920252 CTAATATTGTGAATATGA-ATTCCAATACCGCCAGAAGCTTTAGAAATTAACGCCGCTTC 920194 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAG 63641 | | ||| | |||||| || || || |||||| ||| || ||| | ||| ||| Sbjct 920193 -ATGAAGCGTTTGATAGATCCCATCAATTGAATCATCCTTCATTGCTAA-CAAAAAGCAG 920136 Query 63642 CTAGACATTTGGT--GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 || | | || ||| | | ||| |||||| ||| || || || || | | Sbjct 920135 GATGAAAGGTAGTTGTACGCGCA--TCCGGCATTATATAGTGTTGGCAGTGCATGGATGA 920078 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGT---CTCAATAGCTGAGTCTATATCCCATTGAT 63756 | |||||| || | ||| ||| || ||||| ||| | ||| || ||| | Sbjct 920077 AGTATTTTTGGGACATTAGTACGTATGTTTCCTCAACCGCT---TGTATGTCATCTTGGT 920021 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 ||||| ||| || || | | ||||||| | || ||||| | ||||||||| Sbjct 920020 GAATTTCTATAGCCACTCTGAGAAACATGTATTCTGGAGTTTCAGCTATTTTGTTGCCAG 919961 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 || || | | || || ||||||||||| || | |||||||| Sbjct 919960 TTCTCCAAAGATATGAGTTTTCCAAAGTCTTGATTCCAAAATA 919918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817308709360