Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq37 284 1e-71 >seq37 Length=3023111 Score = 284 bits (314), Expect = 1e-71 Identities = 1150/1790 (64%), Gaps = 45/1790 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| ||||| | |||| | || || | || || |||| || ||||| || || Sbjct 2501036 TCAATGGTGAACTGGATAGCAGCAGAAGCAGCTTGCGTCCTCAAGTAGTACATACCTGTC 2501095 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || ||||||| ||||| ||||| || |||| ||| | || |||| Sbjct 2501096 TTTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAATTTACCCATGGTTGGATCT 2501155 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || | | |||||| ||| || || || ||| |||| || | ||||| Sbjct 2501156 TTGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCAGCTCTATCAGAAGCCATA 2501215 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| ||||| || || |||||||| ||||| || | | || || | ||| Sbjct 2501216 TCAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTACAATGCCTTGATTTCGTCT 2501275 Query 37030 GGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | | ||| |||||| |||||||| | | | | ||| || |||| || | Sbjct 2501276 GGAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATAATGCTACTCTTCATAGCG 2501335 Query 37087 TTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | |||||| || | ||| | | | ||| |||| | || |||||| |||| |||| Sbjct 2501336 TCATTCCAAAT--TCCTAAATCAACCAAATCTTTCAACAAGTATGGATTAACAATTTGAA 2501393 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || |||| || |||||||| | || ||||| ||| ||||| || | | |||| Sbjct 2501394 ACTCACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTGTATGGCTCGAAACATTCAT 2501453 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | |||| || ||||| |||||||| |||||||||||||| || | | | | |||| Sbjct 2501454 TGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTC 2501513 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 ||| || ||| | || | | ||| | ||||| ||||||||| || || ||||| | Sbjct 2501514 TCATACCGTGTTTGGCAAGCTTTTCTTTCAATTCATCCCAATCCCACAATTCAGTTGGCT 2501573 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | | ||||| || ||||| | | ||||| ||||| || | | || || | Sbjct 2501574 TTCTGTTCCACAAGTCGTATTGCAACAAACCTTGCGATGCTGGTGAGCCTTGGTAAGTTT 2501633 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGGCATAATATAT 37442 |||| || || | |||| || ||| | | ||| | || |||| ||| || Sbjct 2501634 CATAGGGACCTTCTTCCGCCGCTAATT--CAATTGATGCTTCAACAGCAGCATGATAGAT 2501691 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||| |||||||| ||||| ||| | ||||||| | ||| ||| | | ||| Sbjct 2501692 TGTTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAATCAAATCCGATTCTCAA 2501751 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | ||||| |||||||||| || || ||||| | | || ||||| ||| || | || Sbjct 2501752 AACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAATTGGTCTGTGTCTCATGTT 2501811 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT--- 37619 ||||| | ||| ||||| || || || ||| || | | |||| | ||| Sbjct 2501812 TGATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAATGACTCTATTCAAATTACG 2501871 Query 37620 TTTAACTAGTAT--TTTCGTAAT---TATTCTC-AACTTGT--CGAACATAAATA-CGTT 37670 | |||| | | | | ||| || || || || |||| | | ||| || | | Sbjct 2501872 TGTAACAACTTTGGTGACGTCATGCAACTTGTCAAAGTTGTACCAAGCATGCTTACCATC 2501931 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 | | || ||| | || | ||| || | | ||||| |||||||||||||| | Sbjct 2501932 CTGCTCAATAAAAGAAGGTAAAGCAATCGAAGCCAAGTTACAAACAGCAACTTCATC-TG 2501990 Query 37731 GTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGC 37789 || | || ||| | ||| || ||| | || ||| |||| |||||||| Sbjct 2501991 GTGCCGAATATTCAACAATTTCACAACACAAGTTGGAAGATTTAATAACACCCAAATTTT 2502050 Query 37790 TTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTA 37849 |||| ||||| || | ||||||| ||| || || | || | || || || || Sbjct 2502051 TTTGGTTGGACTTGGTGTTACAAGCATCCTTGTACAACATGAATGGGGTACCAGTCTCAG 2502110 Query 37850 TTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTT-----AAt 37904 |||| ||||| | || || | ||| || || ||||| ||| | ||| | Sbjct 2502111 TTTGTGCCTCCAAGATGGAATACCACAATTTTTGAGCTTT---GATTGTTTTTCTACCAC 2502167 Query 37905 ttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA--CATCG 37962 ||||| | ||||||| ||| || | ||| || | | ||||| ||| Sbjct 2502168 GACCTTCTT--TCTCGTATTTCTCATACAACTCAACAAATTCGT--CACCATAAGTATCA 2502223 Query 37963 CATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGT 38022 || |||| ||| |||| | | | | ||| || ||| || || || | | Sbjct 2502224 GCCAAGTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATCACCATTTTGCTCAACTCTT 2502283 Query 38023 TCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCG 38082 | |||||| ||||| || | ||| || || | || || ||| | | |||| |||||| Sbjct 2502284 TTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTCTTCC 2502343 Query 38083 TTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTC--TA 38140 || || |||||||| | | || || || |||||||||||||||||||| | Sbjct 2502344 TTACCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTCAAGA 2502403 Query 38141 TATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGT 38200 |||||| | | | || |||||||| || | ||| || |||| | ||| | | | |||| Sbjct 2502404 TATAAAGCAAAA--GCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGTGT 2502461 Query 38201 TATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATAT 38260 | || | | | | ||| || | |||||||| || | ||||| |||| | || | Sbjct 2502462 TGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGATGT 2502521 Query 38261 AAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATA 38320 | | ||| | | || || || || |||||| || ||||| ||| |||||| | Sbjct 2502522 AGGCACCAGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGAAA 2502581 Query 38321 TTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380 | || || ||| ||||| || ||| | |||||||| ||| || || || |||| | Sbjct 2502582 TCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAA 2502641 Query 38381 GTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATG 38440 | |||||| |||||||| || |||||| ||||| || || || ||||| Sbjct 2502642 CCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGAAC 2502701 Query 38441 CATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT-CTATATCA 38499 |||| | || || ||| |||| |||| || || || || || || | ||||| Sbjct 2502702 CATGAGTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAAC-TCTTGGGATATCT 2502760 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || || ||||| | || || ||||| | || |||||||||||||| Sbjct 2502761 CTTCCATGGATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTC 2502810 Score = 251 bits (278), Expect = 7e-62 Identities = 589/881 (67%), Gaps = 16/881 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||| || ||| ||||| | ||| || ||||| |||||||| | | || |||| Sbjct 2627610 CTTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATT 2627551 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||||||| ||| ||||| |||||| | ||||||| ||| || | || Sbjct 2627550 CTCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAA 2627491 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 |||||| || || || ||||| | ||| ||| |||| || ||||||||| || | | Sbjct 2627490 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAA 2627431 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || || | ||| | || || || || ||||| || | ||| || ||| | || || Sbjct 2627430 ACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAAT 2627371 Query 11578 CGACGTTATAACTTCCTTAGAT--GGTGGATGTAATAAATGTTTAAACATTAAACACGCA 11635 | || | || || | | ||| |||| |||||| ||||| || || ||| Sbjct 2627370 T--CTTTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGCA 2627313 Query 11636 AAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGC 11695 |||||| ||||||||||| || | || || | |||||| ||||| || ||||| ||| Sbjct 2627312 AAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGGC 2627253 Query 11696 ATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 || ||||||| || || | ||| || || | |||||| || ||| || || || ||| Sbjct 2627252 ATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACCC 2627193 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCT-TGTTGCTAGATATCCA 11811 || ||||| ||||| || || | ||| || || || | | | || || ||||| Sbjct 2627192 TCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACAATGCATCGGAATCTTGA-ATCCA 2627134 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | | ||||||||||||| |||||||| | || ||||| ||||| || ||||| Sbjct 2627133 TCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATAA 2627074 Query 11872 ATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | | | ||| | ||| | | ||| || || || ||||| ||| ||||| Sbjct 2627073 --GAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCT 2627016 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 |||||||| |||||||| ||||| || ||||| || || || || | | || Sbjct 2627015 GAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGA 2626956 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || || || |||| ||||| | || || ||||| |||||||||||| | || ||| Sbjct 2626955 ACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAA 2626896 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCA 12106 || || | || | || || | |||| | | | | ||||| || ||||||| Sbjct 2626895 AAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTCCAATCA 2626836 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 | | |||||| |||||| | |||||| | ||||| || ||| | | | || Sbjct 2626835 TGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTG 2626776 Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 ||||||| ||| || ||||| || ||||||| || || || Sbjct 2626775 TACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGAC 2626735 Score = 104 bits (114), Expect = 2e-17 Identities = 291/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 || || || ||||| || || |||| |||| | ||||| | ||| || |||||| Sbjct 921407 TTCACCACTTGAAATTCGCCTGATATCACTCGACGAGTATACAAGTTGGAGGTGTATGGT 921348 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 || | ||||||| | ||| ||||||||||| || ||||||||||| || |||| | Sbjct 921347 TCGAAACACTCATTGAACCCTAAGATTTGAGATGTTGAAGCAGTAGGCATGGGAGCTACT 921288 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATC-CCA 37310 | ||| |||||||| ||||| | | | | | ||||| | || ||| || || Sbjct 921287 AAAAGTGAGTTTCTCAACCCATGACTCCTCACATTATCTTTTAACTGATCCCAGTCATCA 921228 Query 37311 TAAATCTGTTGGGTTCTTTA-ACCACATATCATATTGTAGAATACCTTTACTCGCTGGAG 37369 || | | | |||| || | |||||||||| |||| | ||| |||| ||||||| Sbjct 921227 TAGAATTCT--GGTTTTTGATTCCACATATCAAATTGCAAAATGCCTTGCGAAGCTGGAG 921170 Query 37370 AATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAG 37427 | | | | || ||||| || | || | ||| || || ||| | | |||| Sbjct 921169 ATCCAGCAAAGGTTGAGTAAGGACCCTCAAGTATAGATAATT--CAAGTGAGGCCTCTAC 921112 Query 37428 TGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC 37487 || |||| ||| || ||||| || ||||| ||| | | |||| || ||| || Sbjct 921111 AGCAGCATGATAGATGGTTTCAAAGATTTGCGAATTGAGTTTTTTAGCCTCTAGAGAGTC 921052 Query 37488 GAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 |||| | | |||| | ||| | |||||| | ||| || || || ||| |||| || Sbjct 921051 AAATGGTAACCTCAATTCGAGAAATAAATCAGCTAGACCTTGTACGCCTATAGCTATTGG 920992 Query 37548 TCTATGTTTCTTATTAGATCT 37568 || || || || || ||||| Sbjct 920991 TCGATTCTTTTTGTTTGATCT 920971 Score = 102 bits (112), Expect = 8e-17 Identities = 384/598 (64%), Gaps = 6/598 (1%) Strand=Plus/Minus Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 ||| | || |||||| |||||||| | ||| || || ||| ||||| | || | | | Sbjct 920511 TACTCTTTGCATAAACAAATCAGGAATCCACAACCCATAAAACAAATCCCTCGTACGAAA 920452 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||||||||| ||||||||| | | ||| || || || | ||| || ||||| || Sbjct 920451 CTCTTCGTTCCCATGATTCTTTCTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGG 920392 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 || | || || | | |||||||||||||| | || || || | || ||||| | Sbjct 920391 CTCCAAGTAGATAGCGAAAGCTCCTGGTCTTTTGCCTCCACCTTGGTCAACATATCGGGC 920332 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 ||||| || ||| || |||||| || |||| ||| | | | || || | | || Sbjct 920331 AGTGTTGTTGAATACTCGTAACATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGGC 920272 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 ||||| | || | || | ||||| || | ||| || || || | | ||| Sbjct 920271 TATATGCGAGCCTTGGGCCCTAATATTGTGAATATGAATTCCAATACCGCCAGAAGCTTT 920212 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || ||||| || || | | ||| | | | || || || || |||||||| || Sbjct 920211 AGAAATTAACGCCGCTTCATGAAGCGTTTGATAGATCCCATCAATTGAATCATCCTTCAT 920152 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 || || | ||| || || | | | | |||||| ||| ||| ||| || Sbjct 920151 TGCTAACAAAAAGCAGGATGAAAGGTAGTTGTACGCGCATCCGGCATTATATAGTGTTGG 920092 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTA--TATGTTTCTATTACATCATCT 38493 |||||| ||||| |||||| ||| || | || |||||||| || | | | Sbjct 920091 CAGTGCATGGATGAAGTATTTTTGGGAC--ATTAGTACGTATGTTTCCTCAACCGCTTGT 920034 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 || ||| | |||||| ||| || || || | | ||| | || ||| |||| | Sbjct 920033 ATGTCATCTTGGTGAATTTCTATAGCCACTCTGAGAAACATGTATTCTGGAGTTTCAGCT 919974 Query 38554 ATTTTATTATTCTGTT-TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 ||||| || | ||| | ||||| || ||||| || || || |||||||||||| Sbjct 919973 ATTTTGTT-GCCAGTTCTCCAAAGATATGAGTTTTCCAAAGTCTTGATTCCAAAATAA 919917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524583307280