Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq37 136 5e-27 seq16 89.7 6e-13 >seq37 Length=3023111 Score = 136 bits (150), Expect = 5e-27 Identities = 179/246 (73%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 7007 CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--ATATCAGATGG 7064 ||||||| || || || ||||||||||| || || | | | | | | ||| | ||| Sbjct 1390528 CATAAAACTGGCAAAAGACATGACATGGGGGCAACGC--CATCAACAGGAAATCCGGTGG 1390585 Query 7065 ATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAAT 7124 |||||||| | ||| | || | |||||||| |||||| |||||||| || | || | Sbjct 1390586 GTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATTAC 1390645 Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184 ||| || ||||| | ||| || || ||| | ||||| |||| | |||| | ||| Sbjct 1390646 ATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCAGC 1390705 Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATT 7244 |||||||| ||||||||||||||||||| || || ||||||||||| |||||| | Sbjct 1390706 ACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGGGT 1390765 Query 7245 AAATCC 7250 ||||| Sbjct 1390766 CAATCC 1390771 Score = 127 bits (140), Expect = 2e-24 Identities = 216/306 (71%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATCTAACAATT-CAAAATCTTCAAATTTAAAATCAC--ATAAATT- 6755 |||| ||| | ||| || ||||||| ||||||||||||||||||||||| ||| || Sbjct 1390140 GGATAAGGTTCATA-TCCAACAATTTCAAAATCTTCAAATTTAAAATCATCAATAGTTTT 1390198 Query 6756 -ATCAGACtttttttttAAT-----ATTAC-AACAGGTGAAG--GTTTTATTGATCGAGT 6806 || | |||| ||| | || || || | ||| ||||| | || || Sbjct 1390199 AATTGCATCTTTTCTTTCTTCCTTGATCACCAATTTGGGAAATTGTTTTGGTATTCTTGT 1390258 Query 6807 TAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATG 6866 | |||||| |||| || | |||||||||||||| | ||| ||||| || | ||||| Sbjct 1390259 CATTTGTTCCTTTAATGCATCAATATGATCTAAATATACATGGGCATCACCCAAGGTATG 1390318 Query 6867 AATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATA 6926 |||||||| || | |||||| || | ||||||| | | ||| | ||||||||| Sbjct 1390319 GATAAATTCTCCACAATCCATATCCACCACATGAGCAACCATCTTTGTGAGTAATGCATA 1390378 Query 6927 AGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACA 6986 || || | ||| ||||||||||| || |||||||| ||||||||||| || ||| Sbjct 1390379 TGATGCAATATTGAAAGGTACACCCAAGCCCATATCACACGATCTTTGATATAATAAACA 1390438 Query 6987 AGATAA 6992 ||||| Sbjct 1390439 GGATAA 1390444 >seq16 Length=320745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 19352 AAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGT 19411 ||| ||||| |||| ||||| || ||||| ||| || ||||||||| || |||| Sbjct 56817 AAAGTACCTCAAATTGGTGACAAATTTGCATCTAGACATGGTCAAAAAGGTACCATTGGT 56758 Query 19412 ATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATT 19471 | | || | || || ||||||||||| || || ||||| || || ||||| || Sbjct 56757 GTTACATACAGACATGAGGATATGCCTTTCACAGCTGAAGGTATTGTCCCCGATCTAATC 56698 Query 19472 ATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||||||||||||| ||||| || ||||| Sbjct 56697 ATTAACCCACATGCTATTCCATCGCGTATGAC 56666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871724409200