Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq22 156 4e-33 seq3 132 4e-26 seq37 87.8 2e-12 >seq22 Length=92557 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || ||| | | Sbjct 76998 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 76939 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || || |||||||| || ||||||||||| |||||| Sbjct 76938 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 76879 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 76878 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 76819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||||||||||||||| |||| || || ||| ||||| | || |||||| Sbjct 76818 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTT 76768 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || || | | Sbjct 77226 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCATCA 77167 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || || |||||||| || ||||||||||| |||||| Sbjct 77166 GACACTATTGACAACGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 77107 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 77106 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 77047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || || ||| ||||| | || ||| Sbjct 77046 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 76999 >seq3 Length=600384 Score = 132 bits (146), Expect = 4e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 22213 GTAAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||||||| ||||||| ||||| ||||| | || |||||||| ||||| | ||||| || Sbjct 21806 GTAAAGAATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGA 21865 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | || ||| | ||| || |||| || || ||||||||||| || || ||||| Sbjct 21866 GTCATCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACC 21925 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||||||| | | || ||||| || ||||| || || ||| | || | ||||| Sbjct 21926 AGATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGA 21985 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||||| || | || || || ||| ||||| | || ||| Sbjct 21986 CTACAACATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 22040 >seq37 Length=3023111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 129117 CAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTT 129176 ||||||| || | | |||||| ||||| ||||| || | | | |||||| || Sbjct 2501371 CAAGTATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGAGTAAATATTTGA 2501430 Query 129177 GGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 ||| | ||||| || |||||||||| || || ||||| | || | || || ||||| Sbjct 2501431 AGTGTATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCAT 2501490 Query 129237 GTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGT 129296 |||||| | | ||||||| || |||||| | || | || ||| |||| Sbjct 2501491 TGGAGCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTCTTTCAATTCATC 2501550 Query 129297 CCAGTCCCACA-TCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350 ||| ||||||| | | ||| | | || |||||||||||||||||||| | ||| Sbjct 2501551 CCAATCCCACAATTCAGTTGGCTTTCTG-TTCCACAAGTCGTATTGCAACAAACC 2501604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727810728905