Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq22 93.3 3e-14 seq3 87.8 1e-12 >seq22 Length=92557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || || ||| ||||||||| || || || |||| | Sbjct 76772 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 76831 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 76832 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 76891 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | | || ||| || ||||||| ||| | Sbjct 76892 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATA--GTGTCTGATGATTCAA 76949 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 76950 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 76998 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| ||| ||||||||| || || || |||| | Sbjct 77000 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 77059 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 77060 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 77119 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| || || ||| | ||| | | | ||||||| || || Sbjct 77120 ATACCTTCTTTGTCTTGGATCTTGGATTTGA-CGTTGTCAATAGTGTCTGATGACTCAAC 77178 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 77179 CTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 77226 >seq3 Length=600384 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574 |||||||||||||||| ||||| ||||| ||||| || || || || ||| ||| Sbjct 74116 TTACCTAAATCACCAACATGTCTTTCTTGATCATCTGGCCCACCATGGGTCTTACTAAAT 74175 Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 || || ||||| |||||| || || |||||||||||| | || |||||| |||| Sbjct 74176 GGGTTGAAATGAGGACCAGCTGAGGTGCATCCATTGGTGTTGTCACCAAATGCATG 74231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGT-GTTCTTTATG 42570 ||||||||||||||||||| |||| ||| ||||| | || | |||| | |||| | Sbjct 84600 ATGTTACCTAAATCACCAACGTGTCTTTCATCATCTTCTGGAGCACCGTGGGTCTTGCT- 84658 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 ||| || || ||||| |||||| || ||||||||||||||| | || |||||| |||| Sbjct 84659 AAATGGGTTGAAATGAGGACCAGCTGAGGTACATCCATTGGTGTTGTCACCAAATGCATG 84718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369443358021