Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq37 114 2e-20 seq16 102 1e-16 >seq37 Length=3023111 Score = 114 bits (126), Expect = 2e-20 Identities = 350/531 (66%), Gaps = 29/531 (5%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGA---AGACCCTGAAT 64770 |||||||| |||||| ||||||| ||||||||| | || |||| ||| ||||| Sbjct 2626798 TGGACTGCAGAAGAAATTGATTTAGGTAAAGATCTTCATGATTGGAGAGAGAAATTGAAT 2626857 Query 64771 GAAAATGAAAAGAAATTCATA--AAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAA 64828 || ||||||| | ||||| ||| | || |||| || || |||| || ||||| | Sbjct 2626858 GACAATGAAAGGTTTTTCATTGGAAGAA--TCTTGGCCTTTTTCGCTGCCTCTGATGGTA 2626915 Query 64829 TTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCT 64888 ||||| ||| || | | || ||| | | |||||| || || ||||| | Sbjct 2626916 TTGTTAATGAAAACTTGGTGGAAAACTTTTCTGCTGAAGTTCAAATTCCTGAAGCCAAAT 2626975 Query 64889 CATTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTG 64947 |||| || | | ||| | || ||| ||| ||||| ||||| |||||| |||| Sbjct 2626976 CATTTTATGGTTTCCAAATC-ATGATGGAAAACATTCATTCAGAAACTTATTCATTATTG 2627034 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAG-----TTATTTGAAGCCATCC 65002 ||||| | || || |||||| | || ||||| | ||||| | || || Sbjct 2627035 ATTGAAACTTATATCAAGGATCCA-----AAGGAAGCCGATTTCTTATTCAATGCTATTG 2627089 Query 65003 AAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGT 65062 |||| | || ||| | |||||||| | ||||| || | |||| || | | | | Sbjct 2627090 AAACCATCCCTCAAATTAAAAAGAAGGCTGATTGGGCCATCAGATGGATTCA---AGATT 2627146 Query 65063 CTCGCTCC----TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTC 65118 | || | | || || ||| | | |||| ||||| ||| ||||||||||| ||| Sbjct 2627147 C-CGATGCATTGTTTGCTGAGAGATTGGTTGCTTTTGCTGCTGTTGAGGGTATCTTTTTC 2627205 Query 65119 TCCGGGTCATTCTGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATG 65177 || || || ||| | |||| |||||||||||| | || | |||||||| | Sbjct 2627206 AGTGGATCGTT-TGCTTCCATTTTCTGGTTGAAGAAGAGAGGATTAATGCCAGGATTGAC 2627264 Query 65178 CTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| || |||||| | |||| || ||||| ||| | ||| || ||||| Sbjct 2627265 CTTTTCCAATGAATTGATTTGTCGTGATGAAGGTTTACACACTGATTTTGC 2627315 Score = 100 bits (110), Expect = 3e-16 Identities = 219/323 (68%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||||||||| || || |||| | || ||| || || || ||||| | Sbjct 2807585 GGTGCCAAGATCCCCCGTGGTGCTATTCTTTCAGGGCCGCCGGGAACAGGTAAGACATTG 2807526 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC-ATCCAGTGCTCTGCCGCAAA 175394 |||||| ||||| || || ||| | || || || || | || | | | || Sbjct 2807525 CTCGCCAAAGCCACAGCTGGGGAAGCTGGCGTTCCGTTTTATTCTGTATCCGGTTCCGAA 2807466 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || || || ||||||||||||||||||||| | | || || ||| | || | | || Sbjct 2807465 -TTCGTTGAAATGTTTGTTGGTGTGGGTGCCTCACGTGTGCGTGATTTATTCAAGACTGC 2807407 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | |||||| ||||| |||||| || |||| || || ||||| | || |||||| | Sbjct 2807406 AAGGGAAAATGCACCATCTATTGTGTTTGTTGACGAAATCGATGCCATTGGTAAGCAAAG 2807347 Query 175515 CAGCGCTGGTGGTATGC-----CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | | | | | |||| ||| |||||||| |||||| ||| | ||||||||| Sbjct 2807346 -ATC-CAAGGGAAATGCAACAGGAGCTAATGACGAAAGAGAAACTACATTGAATCAACTA 2807289 Query 175570 CTCACCGAGATGGATGGCTTTGA 175592 | || |||||||| ||||| Sbjct 2807288 TTGGTTGAAATGGATGGGTTTGA 2807266 >seq16 Length=320745 Score = 102 bits (112), Expect = 1e-16 Identities = 186/271 (69%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 27781 CCAGTAGATCCAAATCCACCCGCACCTCTCTCTGT-CTCTTCAAGAACACC-----AATT 27834 || || |||||||||||||| |||||| ||| || ||| |||| || |||| Sbjct 6310 CCTGTGGATCCAAATCCACCTTCACCTCGCTCAGTGCTCGTCAATGCTTCCTCAGTAATT 6369 Query 27835 TCCTGCACATCGGGTGTTTCACAGCGCTCAAGGACAAGTTGTGCGATGCGATCCCCTTTC 27894 || | | ||| | | || | || | || | ||| || || | ||| || || Sbjct 6370 TCTTCAATATCAGCATTAACAATTCTTTCTAAAACCAATTGAGCAATTCTATCGCCCTTT 6429 Query 27895 TTTACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAG 27954 || || ||||||| || || || ||||| | || ||||| ||||||||| ||| Sbjct 6430 TTAACATCAAAGTTCTTTTCAGAATGGTTGAACAAGACAACTTTAACTTCACCTCGATAA 6489 Query 27955 TCGGGATCAATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGATCGT 28014 || | ||||| ||||| |||||| | ||||||||| || ||||| || || || || Sbjct 6490 TCAGCGTCAATGACACCTGCACCAGTTGAAATACCATGTTTGACAGCAAGCCCCGAACGA 6549 Query 28015 GGTGCAACACGACCATACACACCATTTGGCA 28045 ||||| ||||||||||| |||| | |||| Sbjct 6550 GGTGCCACACGACCATATGTACCAATAGGCA 6580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569324086560