Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq37 95.1 2e-14 seq16 89.7 7e-13 >seq37 Length=3023111 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 168528 GAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTGTT 168587 ||||| || ||| |||| || || || ||| | ||| || | ||| | ||| ||| Sbjct 1390876 GAACTCTTGTGGTTTATTGCTGGATCCACGGATGCCAAAATCTTGAGTGAAAAAGGAGTT 1390817 Query 168588 AAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAAGA 168647 ||| | ||| | | |||||| || ||||||||||| ||| || ||| | | Sbjct 1390816 AAAATATGGGAGGGCAATGGTCTGCGAGAATTTTTAGACAATCTTGGATTGACCCATCGT 1390757 Query 168648 AAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATAT 168707 ||||||||||| || ||| ||||||| ||||||||||| ||| || ||| ||||| Sbjct 1390756 CGTGAAGGTGATTTGGGACCAGTTTATGGGTTTCAATGGAGGCATTTTGGTGCTGAATAT 1390697 Query 168708 ATTGACTGTGATACAGATTACACCGGACAAGG 168739 | || || ||||| || || || || ||||| Sbjct 1390696 AAAGATTGCGATACTGACTATACTGGCCAAGG 1390665 Score = 86.0 bits (94), Expect = 8e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTAC 193972 || ||| ||||||||||| ||||||||||||| ||| ||| || | | | |||||||| | Sbjct 926834 AGATGGTGGTTTAAGATTGGGAGAAATGGAGAGAGATTGTGTTATCGCTTATGGTGCTTC 926893 Query 193973 TCA-ATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCA 194031 || ||||| | |||||| || | | | ||| ||| ||||| | || |||||||| | Sbjct 926894 CCAGCTTCTTCTA-GAAAGATTGATGATATCTTCAGATGCTTTTGAGGTTGATGTTTGTA 926952 Query 194032 CAGAATGTGGTATGAT 194047 ||||||| |||| Sbjct 926953 ACAAATGTGGGTTGAT 926968 >seq16 Length=320745 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 52049 |||||||| ||||||||||||||||||||||||||||||||||||||| || | | |||| Sbjct 265607 TATAATGCCGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAAACAGAAGAAGCT 265666 Query 52050 ACTGCTGAA 52058 | || ||| Sbjct 265667 AGAGCCGAA 265675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177306230360