Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 178 3e-39 seq22 154 3e-32 seq21 87.8 4e-12 >seq3 Length=600384 Score = 178 bits (196), Expect = 3e-39 Identities = 184/240 (77%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||||| ||||||||| || || || || || || || Sbjct 22040 ACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 21981 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | |||||| ||||||||||| | ||||||||||||||| || Sbjct 21980 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 21921 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| ||||| | || ||||| ||||| || ||| | || || Sbjct 21920 GATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAAC 21861 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 ||| ||||| || || || || || | || || ||||| || |||||| || || |||| Sbjct 21860 TTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATTCTT-TACTTTT 21802 >seq22 Length=92557 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| | || |||||||| || || || || || || Sbjct 76771 ACCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGA 76830 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | |||||| |||||||| || | ||||||||||||||| || Sbjct 76831 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 76890 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||| ||||| | ||| ||||| ||||| || || | ||| || Sbjct 76891 AATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAAC 76950 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || ||||| || ||||| || || || || || ||||| Sbjct 76951 CTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 76998 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||||| || |||||||| || || || || || | Sbjct 76998 TACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGG 77057 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||| ||||| | |||||| |||||||| || | ||||||||||||||| | Sbjct 77058 ACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 77117 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| | ||| || || ||||| || || | || | Sbjct 77118 GAATACCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAA 77177 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||| || ||||| || || || || || |||||| Sbjct 77178 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 77227 >seq21 Length=1407667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 143955 GATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGAGA 144014 ||||||||||| |||||||||| | | |||||||| |||||||| ||||| | || Sbjct 996551 GATGAGTGGACGACTTGGAAAACGAGGCTGGATCCAGTTTTGCATATCGAACTACGTCGA 996610 Query 144015 TGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGCCAAT 144074 ||||| ||| | || || || || || || ||||| |||||| | || || | | Sbjct 996611 TGGGCGGATATATTGGTTGTATGTCCTTTGACTGCAAACACGTTATCCAAGATTTCACTT 996670 Query 144075 GGTATATGCGATAATTTA 144092 || || |||||||||||| Sbjct 996671 GGCATCTGCGATAATTTA 996688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826734552543