Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq37 197 3e-45 seq16 93.3 1e-13 seq6 93.3 1e-13 >seq37 Length=3023111 Score = 197 bits (218), Expect = 3e-45 Identities = 564/861 (66%), Gaps = 7/861 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || ||||| ||||||||| | || | | ||||| | ||| | ||||| | | | Sbjct 2502870 TACTTTGGATTCAAAACTTTGGAGAGATCATATTTGTTACGTATTAATGGAAAAGTTGCT 2502811 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || |||||| || || | | ||||| |||||||| |||||| ||||| | Sbjct 2502810 GAAAGACCACAACACTTGATTATGAGAGTTGCTATTGGTATCCATGGAAGAGATATCCCA 2502751 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||||||| ||| || | | | ||| | || ||||| | |||| Sbjct 2502750 AGAGTTATTGAGACTTACAATTTGATGTCTCAAAGATACTTTACTCATGGTTCTCCATGT 2502691 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 | || || || || ||| | |||| || | ||||| |||||| | | ||| || Sbjct 2502690 TTGTTCAATGCCGGTACTCCAAAACCACAAATGTCATCTTG-TTTCTTGGTTGCAATGAA 2502632 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAA 110601 || ||||||||||||||||||||||| || ||||||| | ||| | ||||| |||| Sbjct 2502631 AGAAGATTCTATTGAAGGTATTTATGACACT-TTAAAGACATGTGCCTTGATTTCAAAAA 2502573 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 |||| || ||||| | || | || | ||||| || | || || | ||||| Sbjct 2502572 GTGCTGGTGGTATTGGATTGCATATCCACAACATTCGTTCCACTGGTGCCTACATCGCTG 2502513 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || ||| |||||| ||| || |||||||| | | || |||||| ||||||| Sbjct 2502512 GTACCAACGGTACTTCAAATGGTATTATTCCAATGGTTCGTGTTTTCAACAACACTGCTC 2502453 Query 110722 AATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| ||||||||||| |||||| || | |||||| | ||||| ||||| | Sbjct 2502452 GTTATGTGGATCAAGGTGGTAACAAGAGACCAGGTGCTTTTGCTTTATATCTTGAACCAT 2502393 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| | ||||| ||||| ||| | ||| || | || || || || |||||| | Sbjct 2502392 GGCACGCTGATATCTTTGACTTCATTGAAATTAGAAAGAACCATGGTAAGGAAGAAATTA 2502333 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 |||| | || || || || ||||||| ||||||| || |||||| | ||| | Sbjct 2502332 GAGCTAGAGACTTGTTCCCAGCTTTGTGGATCCCAGATTTGTTTATGAAAAGAGTTGAGC 2502273 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 ||||||| ||| | | | | ||| || |||| | ||||| |||| Sbjct 2502272 AAAATGGTGATTGGACATTGTTCTCTCCAAATGAAGCTCCAAACTTGGCTGATACTTATG 2502213 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 | | || |||| || | || || ||||| || |||||||| | | ||| || Sbjct 2502212 GTGACGAATTTGTTGAGTTGTATGAGAAATACGAGAAAGAAGGTCGTGGTAGAAAAACAA 2502153 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | ||||||| || | |||| ||| | || ||||| ||| ||||| || || | Sbjct 2502152 TCAAAGCTCAAAAATTGTGGTATTCCATCTTGGAGGCACAAACTGAGACTGGTACCCCAT 2502093 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || ||||| || ||| | ||| ||| || || |||| ||||| || |||| Sbjct 2502092 TCATGTTGTACAAGGATGCTTGTAACACCAAGTCCAACCAAAAAAATTTGGGTGTTATTA 2502033 Query 111139 AGTCTAGTAATTTGTGCTGTG 111159 | ||| || ||||| |||| Sbjct 2502032 AATCTTCCAACTTGTGTTGTG 2502012 Score = 152 bits (168), Expect = 1e-31 Identities = 495/753 (66%), Gaps = 23/753 (3%) Strand=Plus/Plus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 ||||| |||| | | || || ||| | ||||| ||||| ||| || | |||||| Sbjct 2626741 TTTCCTATTAGATACCATGAAATTTGGCAAATGTACAAGAAGGCTGAAGCATCATTCTGG 2626800 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGG---GAAAAATTAACCTTG 131551 |||| ||||| || ||| | |||||| || |||||||| || ||||| | Sbjct 2626801 ACTGCAGAAGAAATTGATTTAGGTAAAGATCTTCATGATTGGAGAGAGAAATTGAATGAC 2626860 Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTG-CATTCTTCGCCGGAAGTGATGGCATTGT 131610 ||||||| | |||| || || ||||| | || ||||| | |||||| ||||| Sbjct 2626861 AATGAAAG-GTTTTTCATTGGAAGAATCTTGGCCTTTTTCGCTGCCTCTGATGGTATTGT 2626919 Query 131611 TATTGAAAATCTTGTTATTAA--TTTCATTCAAGAAATTGATATTCCTGAAGTAACATCG 131668 || |||||| |||| | || ||| | | ||| || | |||||||||| | ||| Sbjct 2626920 TAATGAAAA-CTTGGTGGAAAACTTTTCTGCT-GAAGTTCAAATTCCTGAAGCCAAATCA 2626977 Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATT 131728 || || || ||| | | ||| |||||| || | ||||||||||||||| Sbjct 2626978 TTTTATGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACTTATTCATTATTGATT 2627037 Query 131729 GAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTT 131788 || | | | | || || | | || || ||||| ||||| | | | | Sbjct 2627038 GAAACTTATATCAAGGATCCAAAGGAAGCCGATTTCTTATTCAATGCTATTGAAACCATC 2627097 Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCT-AA 131847 ||| |||||||||||| || || ||||| || | |||||||||| ||||||| | | Sbjct 2627098 CCTCAAATTAAAAAGAAGGCTGATTGGGCCATCAGATGGATTCAA---GATTCCGATGCA 2627154 Query 131848 T--TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCT 131905 | ||| || ||| | || ||||||||| |||||| ||||| | |||||| ||| Sbjct 2627155 TTGTTTGCTGAGAGATTGGTTGCTTTTGCTGCTGTTGAGGGTATCT--TTTTCA-GTGGA 2627211 Query 131906 TTCTGTGCT---ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCC 131962 | | |||| || || ||| | |||||| | ||||| ||||| ||| | | || ||| Sbjct 2627212 TCGTTTGCTTCCATTTTCTGGTTGAAGAAGAGAGGATTAATGCCAGGATTGACCTTTTCC 2627271 Query 131963 AATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGA 132022 ||| |||| || | | ||||||| || || ||||| ||||| || | | | | Sbjct 2627272 AATGAATTGATTTGTCGTGATGAAGGTTTACACACTGATTTTGC-ATGCTTGTTGTTTGC 2627330 Query 132023 AAATTTGC-TGATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGA 132081 |||| | ||| || ||| ||| | | || || | |||| | ||||||||||| Sbjct 2627331 TCATTTACAACATAGACCTGACCCAAAGATTGTTGAAAGAATTATTACTGAAGCAGTTGA 2627390 Query 132082 TATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA 132141 || || || || || |||| || || ||||| | |||| | || |||||| | | Sbjct 2627391 AATTGAAAAAGAATTCTTTACTGATGCATTGCCAGTTAGTTTGTTGGGAATGAATTGTAA 2627450 Query 132142 CTCTATGAAGGAGTACATTGAATTCGTTGCTGA 132174 | ||| | || ||||||| ||||| || Sbjct 2627451 GTTGATGTGTCAATATGTTGAATTTGTTGCCGA 2627483 Score = 120 bits (132), Expect = 7e-22 Identities = 141/184 (77%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| ||| ||||| || ||||||| | ||||||||| |||||||||||||| Sbjct 18629 CATTTGATGGACGATGATCCAGTCTTGTTCAACCGTCAACCATCATTGCATAAAATGTCT 18570 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAA--TGTAAG 305424 |||||||| || | ||| || | |||| | ||| ||||| ||||||| ||| || Sbjct 18569 ATGATGGCGCACAGAGTGAAGG--TTATGCCATATTCTACATTCAGATTAAACTTGTCAG 18512 Query 305425 T-GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 | ||| | || |||||||| ||||| ||||| || |||||||| |||||||||||| Sbjct 18511 TAACTT---CACCGTATAATGCCGATTTCGATGGTGACGAAATGAACTTGCATGTACCTC 18455 Query 305484 AATC 305487 |||| Sbjct 18454 AATC 18451 >seq16 Length=320745 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/156 (75%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | || || ||| |||||| | | || || |||| ||| | | |||||| | Sbjct 265505 TTCAATCGTCAGCCTTCATTGCATAGATTATCCATTTTGGCGCATTATGCCAAAGT-TCG 265563 Query 305396 TC--TGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 || |||| || |||| |||| |||| ||| || || ||||||||||| |||||| Sbjct 265564 TCCTTGGA--GAACTTTCAGATTGAATGAGTGTGTATGCACACCTTATAATGCCGATTTT 265621 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| |||||||||||| | ||||| |||||| || Sbjct 265622 GATGGGGATGAAATGAATTTACATGTTCCTCAAACA 265657 >seq6 Length=582873 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 ||||||||||||| || ||| |||||| || |||||||||| ||||| |||| || Sbjct 1147 CACCAGCATTATCAAACTCACCACAATAATTGGGAGCTGAAAATAATGTAACCAATTGAC 1088 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | || || |||||||| |||||||||||||||| ||| ||||| Sbjct 1087 GTTTACTGAAAAATTCATATCCATCTTCAACAACTTGATGAGCACG 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812237376557