Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq22 109 5e-19 seq37 102 7e-17 seq3 95.1 1e-14 >seq22 Length=92557 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| ||||| || || ||||||||||| ||||||||| | Sbjct 76772 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 76831 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | |||||||| || |||| | | |||||||| || || Sbjct 76832 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 76891 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||||||| ||| | | || | |||||||| | |||||| Sbjct 76892 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACC 76951 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| || || | || || |||| ||||| || || ||||||||| Sbjct 76952 TCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATA 76999 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || || || || ||||||||||| ||||||||| | Sbjct 77000 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 77059 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | |||||||| || |||| | | |||||||| || || Sbjct 77060 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 77119 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||||||| ||| | | | || | |||||||| | ||||| Sbjct 77120 ATACCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAACC 77179 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || | || || |||| ||||| || || |||||||| Sbjct 77180 TCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 77226 >seq37 Length=3023111 Score = 102 bits (112), Expect = 7e-17 Identities = 238/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 || || || ||||||| |||||||||||||| || | ||| || || |||| ||| Sbjct 2502266 CCATTTTGCTCAACTCTTTTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCT 2502325 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAA--AAGTCCAAAATGT 131753 |||||| | | ||||| || |||| || |||| ||||| || ||||| || || | Sbjct 2502326 CTAGCTCTAATTTCTTCCTTA-CCAT-GGTTCTTTCTAATTTCAATGAAGTCAAAGATAT 2502383 Query 131754 CCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGAT 131810 | || ||||| ||||| | ||| | || | || ||| | | ||||| ||||||| Sbjct 2502384 CAGCGTGCCATGGTTCAAGATATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGAT 2502443 Query 131811 TAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTC 131870 |||| |||| | |||||||| | || || | ||| || | ||| || | | | Sbjct 2502444 CCACATAACGAGCAGTGTTGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTAC 2502503 Query 131871 CATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATAC 131930 | ||||| | |||||| ||| ||| | || ||||| | | | |||||||| Sbjct 2502504 CGTTGGTACCAGCGATGTAGGCACCAGTGGAACGAATGTTGTGGATATGCAATCCAATAC 2502563 Query 131931 CTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985 | || | ||| || || | || ||| | ||| ||||| ||| |||||||| Sbjct 2502564 CACCAGCACTTTTTGAAATCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTC 2502618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||| | ||| | ||||| |||||||| |||||||||| || | |||| ||| Sbjct 2501362 ATCTTTCAACAAGTATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGAGTA 2501421 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||| || ||| | || || || |||| ||||| || || ||||||| ||||| || Sbjct 2501422 AATATTTGAAGTGTATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGAAGC 2501481 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| ||||| || | || || | | |||||| | | | ||| || Sbjct 2501482 AGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTCTTT 2501541 Query 130915 CAATTCATCCCAATCCCA 130932 |||||||||||||||||| Sbjct 2501542 CAATTCATCCCAATCCCA 2501559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/292 (67%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| | |||||||||||| || | ||| ||| | || |||| ||| || | | Sbjct 920510 ACTCTTTGCATAAACAAATCAGGAATCCACAACCCATAAAACAAATCCCTCGTACGAAAC 920451 Query 131708 TCTTCTGTACCCATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766 ||||| || ||||| ||| ||| ||| ||||||| || || | || |||||||| || Sbjct 920450 TCTTC-GTTCCCATGATTCTTTCTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGG 920392 Query 131767 TTCCAAATACACTGCCATTGCGCCT----TTGCGCTTACCGCCTTGATTAACATGACGAA 131822 ||||| || | || | || ||| || || | || ||||| | ||||| || Sbjct 920391 CTCCAAGTAGATAGCGAAAGCTCCTGGTCTTTTGCCT-CCACCTTGGTCAACATATCGGG 920333 Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882 | |||||||| |||| || |||||||| | | || || ||||||||||||| Sbjct 920332 CAGTGTTGTTGAATACTCGTAACATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGG 920273 Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 || | ||| | ||| || || ||||||| | | ||||||||| || Sbjct 920272 CTATATGCGAGCCTTGGGCCCTAATATTGTGAATATGAATTCCAATACCGCC 920221 >seq3 Length=600384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || || ||||| || ||||| || ||||||||| | Sbjct 22039 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 21980 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| | |||||||| || | || | | |||||||| || || Sbjct 21979 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGG 21920 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | || | ||||| | | |||||| Sbjct 21919 ATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACT 21860 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||| || | ||| ||||| || ||||| |||||||||||||| Sbjct 21859 TCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 21813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934208381144