Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05]
37 sequences; 13,050,082 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq22 109 5e-19
seq37 102 7e-17
seq3 95.1 1e-14
>seq22
Length=92557
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | ||| | ||| ||||| ||||| || || ||||||||||| ||||||||| |
Sbjct 76772 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 76831
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | ||||| | |||||||| || |||| | | |||||||| || ||
Sbjct 76832 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 76891
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| ||||| || ||||||| ||| | | || | |||||||| | ||||||
Sbjct 76892 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACC 76951
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||| || || | || || |||| ||||| || || |||||||||
Sbjct 76952 TCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATA 76999
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | ||| | ||| ||||| || || || || ||||||||||| ||||||||| |
Sbjct 77000 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 77059
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | ||||| | |||||||| || |||| | | |||||||| || ||
Sbjct 77060 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 77119
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| ||||| || ||||||| ||| | | | || | |||||||| | |||||
Sbjct 77120 ATACCTTCTTTGTCTTGGATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAACC 77179
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| || || | || || |||| ||||| || || ||||||||
Sbjct 77180 TCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 77226
>seq37
Length=3023111
Score = 102 bits (112), Expect = 7e-17
Identities = 238/355 (67%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695
|| || || ||||||| |||||||||||||| || | ||| || || |||| |||
Sbjct 2502266 CCATTTTGCTCAACTCTTTTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCT 2502325
Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAA--AAGTCCAAAATGT 131753
|||||| | | ||||| || |||| || |||| ||||| || ||||| || || |
Sbjct 2502326 CTAGCTCTAATTTCTTCCTTA-CCAT-GGTTCTTTCTAATTTCAATGAAGTCAAAGATAT 2502383
Query 131754 CCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGAT 131810
| || ||||| ||||| | ||| | || | || ||| | | ||||| |||||||
Sbjct 2502384 CAGCGTGCCATGGTTCAAGATATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGAT 2502443
Query 131811 TAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTC 131870
|||| |||| | |||||||| | || || | ||| || | ||| || | | |
Sbjct 2502444 CCACATAACGAGCAGTGTTGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTAC 2502503
Query 131871 CATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATAC 131930
| ||||| | |||||| ||| ||| | || ||||| | | | ||||||||
Sbjct 2502504 CGTTGGTACCAGCGATGTAGGCACCAGTGGAACGAATGTTGTGGATATGCAATCCAATAC 2502563
Query 131931 CTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTC 131985
| || | ||| || || | || ||| | ||| ||||| ||| ||||||||
Sbjct 2502564 CACCAGCACTTTTTGAAATCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTC 2502618
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794
|||||| | ||| | ||||| |||||||| |||||||||| || | |||| |||
Sbjct 2501362 ATCTTTCAACAAGTATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGAGTA 2501421
Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854
||| || ||| | || || || |||| ||||| || || ||||||| ||||| ||
Sbjct 2501422 AATATTTGAAGTGTATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGAAGC 2501481
Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914
|| ||||| ||||| || | || || | | |||||| | | | ||| ||
Sbjct 2501482 AGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTCTTT 2501541
Query 130915 CAATTCATCCCAATCCCA 130932
||||||||||||||||||
Sbjct 2501542 CAATTCATCCCAATCCCA 2501559
Score = 87.8 bits (96), Expect = 2e-12
Identities = 197/292 (67%), Gaps = 7/292 (2%)
Strand=Plus/Minus
Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707
|||| | |||||||||||| || | ||| ||| | || |||| ||| || | |
Sbjct 920510 ACTCTTTGCATAAACAAATCAGGAATCCACAACCCATAAAACAAATCCCTCGTACGAAAC 920451
Query 131708 TCTTCTGTACCCATAAtttttt-tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGG 131766
||||| || ||||| ||| ||| ||| ||||||| || || | || |||||||| ||
Sbjct 920450 TCTTC-GTTCCCATGATTCTTTCTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGG 920392
Query 131767 TTCCAAATACACTGCCATTGCGCCT----TTGCGCTTACCGCCTTGATTAACATGACGAA 131822
||||| || | || | || ||| || || | || ||||| | ||||| ||
Sbjct 920391 CTCCAAGTAGATAGCGAAAGCTCCTGGTCTTTTGCCT-CCACCTTGGTCAACATATCGGG 920333
Query 131823 CCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT 131882
| |||||||| |||| || |||||||| | | || || |||||||||||||
Sbjct 920332 CAGTGTTGTTGAATACTCGTAACATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGG 920273
Query 131883 TAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934
|| | ||| | ||| || || ||||||| | | ||||||||| ||
Sbjct 920272 CTATATGCGAGCCTTGGGCCCTAATATTGTGAATATGAATTCCAATACCGCC 920221
>seq3
Length=600384
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || | ||| | ||| ||||| || || ||||| || ||||| || ||||||||| |
Sbjct 22039 CCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 21980
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | | ||||| | |||||||| || | || | | |||||||| || ||
Sbjct 21979 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGG 21920
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || || || ||||||| || | | || | ||||| | | ||||||
Sbjct 21919 ATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACT 21860
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| ||| || | ||| ||||| || ||||| ||||||||||||||
Sbjct 21859 TCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 21813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934208381144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |