Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 seq37 84.2 3e-11 seq16 82.4 9e-11 >seq2 Length=358706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/320 (67%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 ||||||| || ||||| || ||| | ||| || | || | ||| || |||||||| Sbjct 130605 TATCAAACCCGTCCATTTCAACCAATAATTGATTCAAGGTGTTTTCACGCTCATCATTGC 130664 Query 9669 CTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 | ||||| |||| || | || || || | |||||||||||||||| || | || Sbjct 130665 CACCCATACGACCATTACCTCTTTCTTTACCAATAGCATCAATCTCATCAACAAAAATGA 130724 Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 | ||| | || | || || || | ||| ||||||||| || || |||| Sbjct 130725 TTGCTGGGGCCATATCCCTTGCCGTTTTGAATAAATCACGTACACGCGATGCACCAACAC 130784 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTCA 9847 ||||||||||||| ||||| | | ||| |||| | || || || ||| | |||| Sbjct 130785 CAACAAACATCTCAACAAATTCCGATCCGGAAACACT-GAGAAAAGGTACACCTGCTTCA 130843 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 || ||| | ||| || | | |||||||| ||||| || |||| | | ||| Sbjct 130844 CCAGCAGTTGCTTTTGCCAACAAGGTCTTACCTGTACCAGGAGGCCCCGACAAAATTGCA 130903 Query 9908 CCTCGTGGAATCTTGGCGCC 9927 || || || |||||||| || Sbjct 130904 CCACGAGGGATCTTGGCACC 130923 >seq37 Length=3023111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 219/327 (67%), Gaps = 13/327 (4%) Strand=Plus/Plus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 ||||||| |||||||| || ||| ||||| || | || ||| | ||| ||||| | Sbjct 2807264 TATCAAACCCATCCATTTCAACCAATAGTTGATTCAATGTAGTTTCTCTTTCGTCATTAG 2807323 Query 9669 CTG-----GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAA 9723 || |||| | | | | | |||||| || | |||||| || || |||| || Sbjct 2807324 CTCCTGTTGCATTTCCCTTGGAT--CTTTGCTTACCAATGGCATCGATTTCGTCAACAAA 2807381 Query 9724 GACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGC 9782 || || ||||| |||||| | || | ||| || | ||| || ||||| ||| | Sbjct 2807382 CACAATAGATGGTGCATTTTCCCTTGCAGTCTTGAATAA-ATCACGCACACGTGAGGCAC 2807440 Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGAT-GAAGGGGACATT 9840 |||||||||||||||| || || || | | |||| ||| | || || || || Sbjct 2807441 CCACACCAACAAACATTTCAACGAATTCGGAACCGGATACA--GAATAAAACGGAACGCC 2807498 Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9900 || ||| || || ||||| |||||| | |||||||| || || ||| || | || Sbjct 2807499 AGCTTCCCCAGCTGTGGCTTTGGCGAGCAATGTCTTACCTGTTCCCGGCGGCCCTGAAAG 2807558 Query 9901 GAGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||||| || || |||||||| || Sbjct 2807559 AATAGCACCACGGGGGATCTTGGCACC 2807585 >seq16 Length=320745 Score = 82.4 bits (90), Expect = 9e-11 Identities = 173/257 (67%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165 ||||| ||||| || || || || || || ||||| ||||||||||| | |||||| Sbjct 6566 TATGGTCGTGTGGCACCTCGTTCGGGGCTTGCTGTCAAACATGGTATTTCAACTGGTGCA 6507 Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225 ||||| |||| | || || |||||||| ||||| || | ||||| || || Sbjct 6506 GGTGTCATTGACGCTGATTATCGAGGTGAAGTTAAAGTTGTCTTGTTCAACCATTCTGAA 6447 Query 154226 AAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAG 154285 || ||||||| || || | ||| || | || || ||| | ||| | || || || Sbjct 6446 AAGAACTTTGATGTTAAAAAGGGCGATAGAATTGCTCAATTGGTTTTAGAAAGAATTGTT 6387 Query 154286 ACACCCGATGTGGAGGAAATT-----GGCTTCCTTGAAGAG-ACGGAGAGGGGTGCAGGC 154339 | | ||| | || |||||| || | |||| ||| || ||| | |||| ||| Sbjct 6386 AATGCTGATATTGAAGAAATTACTGAGGAAGCATTGACGAGCACTGAGCGAGGTGAAGGT 6327 Query 154340 GGATTTGGTTCTACCGG 154356 |||||||| || || || Sbjct 6326 GGATTTGGATCCACAGG 6310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260530241880