Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05]
37 sequences; 13,050,082 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 87.8 2e-12
seq37 84.2 3e-11
seq16 82.4 9e-11
>seq2
Length=358706
Score = 87.8 bits (96), Expect = 2e-12
Identities = 213/320 (67%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668
||||||| || ||||| || ||| | ||| || | || | ||| || ||||||||
Sbjct 130605 TATCAAACCCGTCCATTTCAACCAATAATTGATTCAAGGTGTTTTCACGCTCATCATTGC 130664
Query 9669 CTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728
| ||||| |||| || | || || || | |||||||||||||||| || | ||
Sbjct 130665 CACCCATACGACCATTACCTCTTTCTTTACCAATAGCATCAATCTCATCAACAAAAATGA 130724
Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
| ||| | || | || || || | ||| ||||||||| || || ||||
Sbjct 130725 TTGCTGGGGCCATATCCCTTGCCGTTTTGAATAAATCACGTACACGCGATGCACCAACAC 130784
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTCA 9847
||||||||||||| ||||| | | ||| |||| | || || || ||| | ||||
Sbjct 130785 CAACAAACATCTCAACAAATTCCGATCCGGAAACACT-GAGAAAAGGTACACCTGCTTCA 130843
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
|| ||| | ||| || | | |||||||| ||||| || |||| | | |||
Sbjct 130844 CCAGCAGTTGCTTTTGCCAACAAGGTCTTACCTGTACCAGGAGGCCCCGACAAAATTGCA 130903
Query 9908 CCTCGTGGAATCTTGGCGCC 9927
|| || || |||||||| ||
Sbjct 130904 CCACGAGGGATCTTGGCACC 130923
>seq37
Length=3023111
Score = 84.2 bits (92), Expect = 3e-11
Identities = 219/327 (67%), Gaps = 13/327 (4%)
Strand=Plus/Plus
Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668
||||||| |||||||| || ||| ||||| || | || ||| | ||| ||||| |
Sbjct 2807264 TATCAAACCCATCCATTTCAACCAATAGTTGATTCAATGTAGTTTCTCTTTCGTCATTAG 2807323
Query 9669 CTG-----GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAA 9723
|| |||| | | | | | |||||| || | |||||| || || |||| ||
Sbjct 2807324 CTCCTGTTGCATTTCCCTTGGAT--CTTTGCTTACCAATGGCATCGATTTCGTCAACAAA 2807381
Query 9724 GACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGC 9782
|| || ||||| |||||| | || | ||| || | ||| || ||||| ||| |
Sbjct 2807382 CACAATAGATGGTGCATTTTCCCTTGCAGTCTTGAATAA-ATCACGCACACGTGAGGCAC 2807440
Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGAT-GAAGGGGACATT 9840
|||||||||||||||| || || || | | |||| ||| | || || || ||
Sbjct 2807441 CCACACCAACAAACATTTCAACGAATTCGGAACCGGATACA--GAATAAAACGGAACGCC 2807498
Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9900
|| ||| || || ||||| |||||| | |||||||| || || ||| || | ||
Sbjct 2807499 AGCTTCCCCAGCTGTGGCTTTGGCGAGCAATGTCTTACCTGTTCCCGGCGGCCCTGAAAG 2807558
Query 9901 GAGGGCACCTCGTGGAATCTTGGCGCC 9927
| ||||| || || |||||||| ||
Sbjct 2807559 AATAGCACCACGGGGGATCTTGGCACC 2807585
>seq16
Length=320745
Score = 82.4 bits (90), Expect = 9e-11
Identities = 173/257 (67%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165
||||| ||||| || || || || || || ||||| ||||||||||| | ||||||
Sbjct 6566 TATGGTCGTGTGGCACCTCGTTCGGGGCTTGCTGTCAAACATGGTATTTCAACTGGTGCA 6507
Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225
||||| |||| | || || |||||||| ||||| || | ||||| || ||
Sbjct 6506 GGTGTCATTGACGCTGATTATCGAGGTGAAGTTAAAGTTGTCTTGTTCAACCATTCTGAA 6447
Query 154226 AAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAG 154285
|| ||||||| || || | ||| || | || || ||| | ||| | || || ||
Sbjct 6446 AAGAACTTTGATGTTAAAAAGGGCGATAGAATTGCTCAATTGGTTTTAGAAAGAATTGTT 6387
Query 154286 ACACCCGATGTGGAGGAAATT-----GGCTTCCTTGAAGAG-ACGGAGAGGGGTGCAGGC 154339
| | ||| | || |||||| || | |||| ||| || ||| | |||| |||
Sbjct 6386 AATGCTGATATTGAAGAAATTACTGAGGAAGCATTGACGAGCACTGAGCGAGGTGAAGGT 6327
Query 154340 GGATTTGGTTCTACCGG 154356
|||||||| || || ||
Sbjct 6326 GGATTTGGATCCACAGG 6310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260530241880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |