Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq22 165 2e-35 seq3 152 1e-31 seq35 100 7e-16 >seq22 Length=92557 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| || Sbjct 76783 TCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 76842 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| || || | || |||||| || || ||||||||||| || Sbjct 76843 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 76902 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || ||| || || |||||||| | ||| || ||||| ||||| Sbjct 76903 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGAT 76962 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| ||||| | ||| | |||||| Sbjct 76963 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 76998 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| || Sbjct 77011 TCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 77070 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| || || | || |||||| || || ||||||||||| || Sbjct 77071 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 77130 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || || || || |||||||| | || || ||||| ||||| Sbjct 77131 GTCTTGGATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGAT 77190 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| ||||| | ||| | ||||||| Sbjct 77191 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 77227 >seq3 Length=600384 Score = 152 bits (168), Expect = 1e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||| ||||| ||||||| ||||| |||| ||||||||| || Sbjct 22028 TCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 21969 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || |||||| || || || || |||||||| Sbjct 21968 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTT 21909 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || |||||||| || | || || ||||| ||||| Sbjct 21908 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACTTCTAAAGTGAT 21849 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| | ||||| | || | ||||||| Sbjct 21848 GGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATT 21812 >seq35 Length=916310 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || |||||||||||||| |||||||| Sbjct 602566 GAAAATTTGACCATCAGTAATGGAAATAACATTGGTTGGGATATAAGCAGAGACATCACC 602625 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | | || || || || | ||| |||||||| Sbjct 602626 ACCTTGGGTTTCAATGATTGGCAAAGCAGTCAATGAACCACCACC 602670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530634665678