Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982555.1_202014-03-05] 37 sequences; 13,050,082 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq22 147 5e-30 seq3 123 5e-23 >seq22 Length=92557 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 76790 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 76849 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 76850 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 76909 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 76910 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 76969 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 76970 CCGGTCAATGTTTTGACGAAAATTTGCAT 76998 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 77018 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 77077 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 77078 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 77137 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| ||| | || |||||||| || | || || || | ||||| |||||| Sbjct 77138 ATCTTGGATTTGACGTTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCTTA 77197 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || ||||| || |||||| Sbjct 77198 CCGGTCAATGTTTTGACGAAAATTTGCATT 77227 >seq3 Length=600384 Score = 123 bits (136), Expect = 5e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||| | | || | ||||| || | |||||| || ||||| Sbjct 22004 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 21945 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||| || || || || ||||||||||||||||| | || || | Sbjct 21944 GATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATT 21885 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || ||||| | |||||| || |||||||| | || || || Sbjct 21884 GTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGAC 21825 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 21824 AAAGATTTGCATT 21812 Score = 93.3 bits (102), Expect = 9e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| ||||| | ||||| || |||| || ||||||| || || || ||||||||| Sbjct 409104 GGGAAACCTTCAACTTGACCATTGGCAATGGCTCTCATCAAGGTGGATTTACCAGCACCA 409163 Query 317089 TTGGGGCCGCAAAGACCATA---CCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145 || || || || | |||||| | |||| |||| | |||| |||| |||||| Sbjct 409164 TTTGGACCACACAAACCATATCTTCTGTTTC---TCTTTAATCTAAATTGGGTCTTGTTC 409220 Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | | ||||| ||||||| |||| ||||||||||| | ||||| ||| || || Sbjct 409221 AACAAGATCTTGGCACCATAAGCCAACGAGAACTCACAGTTACACAAGTCTTCACC 409276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738703780198