Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15 147 3e-30 seq6 134 2e-26 seq39 100 4e-16 >seq15 Length=2091020 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| || | || ||| | || || || || || || ||||| |||| || Sbjct 2075700 ACAATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCA 2075641 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| ||| Sbjct 2075640 TCAGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 2075581 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || |||||||| || ||| || |||| || || || Sbjct 2075580 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTAC 2075521 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || |||||||||||||| || ||||| ||||| || | || |||||||||| ||| | Sbjct 2075520 AACATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATT 2075461 Query 124776 T 124776 | Sbjct 2075460 T 2075460 Score = 145 bits (160), Expect = 1e-29 Identities = 210/294 (71%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 2075013 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2074954 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2074953 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2074894 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 2074893 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2074834 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-- 124776 |||||||||||||| || || || ||||| || | || |||||||| || || ||| Sbjct 2074833 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTTTAAGATTTA 2074774 Query 124777 CATAAAAATTGATTGTAAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830 |||||| || || || | ||||| || | || || | ||| | |||||| Sbjct 2074773 GATAAAAGTTAATAGTCTACTAATATATCTTCTAACAA-TGTATTTTCTATTTT 2074721 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 2075241 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075182 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2075181 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075122 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 2075121 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075062 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || ||||| ||||| || | || |||||||||| ||| || Sbjct 2075061 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 2075004 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || || || || || ||||| ||||| || Sbjct 2075469 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075410 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||||| Sbjct 2075409 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075350 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || |||||||| || ||| || |||| || || || || Sbjct 2075349 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075290 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || ||||| ||||| || | || |||||||||| ||| || Sbjct 2075289 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 2075232 >seq6 Length=960076 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || || ||||| || ||| |||| |||| || Sbjct 21802 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 21861 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 21862 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 21921 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||||| || ||| || |||| || || || || Sbjct 21922 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 21981 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| |||||||| ||||| || | || |||||||| |||||| Sbjct 21982 CATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAAA 22038 >seq39 Length=2831396 Score = 100 bits (110), Expect = 4e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677 || ||||| |||| | || || ||||| | || ||| |||||| || || || Sbjct 1392358 GGGTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATT 1392417 Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737 | || | || |||||||| ||||| ||||| | ||||| ||| |||||| | Sbjct 1392418 ACATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCA 1392477 Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797 ||||||||||| | ||||||||| ||||||||||| || ||||||||||| | || Sbjct 1392478 GCACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGG 1392537 Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857 | || ||| | || | || | ||| | ||||| | ||||| || | | |||| Sbjct 1392538 GTCAATCCAAGATTGTCTAAAAATTCTCGCAGACCATTGCCCTCCCATATTTTAACTCCT 1392597 Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 || | | | || || | || || ||||||| |||||||| || | ||| Sbjct 1392598 TTTTCACTCAAGATTTTGGCATCCGTGGATCCAGCAATAAACCACAAGAGTTC 1392650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455631715200