Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24]
39 sequences; 13,025,060 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq15 147 3e-30
seq6 134 2e-26
seq39 100 4e-16
>seq15
Length=2091020
Score = 147 bits (162), Expect = 3e-30
Identities = 177/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
||||||||||| || | || ||| | || || || || || || ||||| |||| ||
Sbjct 2075700 ACAATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCA 2075641
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|| || ||| ||| | ||| || || ||||| ||||||||||| ||||| |||
Sbjct 2075640 TCAGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGAT 2075581
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | |||||||| || |||||||| || ||| || |||| || || ||
Sbjct 2075580 CAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTAC 2075521
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
|| |||||||||||||| || ||||| ||||| || | || |||||||||| ||| |
Sbjct 2075520 AACATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATT 2075461
Query 124776 T 124776
|
Sbjct 2075460 T 2075460
Score = 145 bits (160), Expect = 1e-29
Identities = 210/294 (71%), Gaps = 3/294 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| | || || || || || || ||||| ||||| ||
Sbjct 2075013 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2074954
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || ||||| ||||||||||| ||||| ||||||
Sbjct 2074953 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2074894
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | |||||||| || |||||||| || ||| || |||| || || || ||
Sbjct 2074893 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2074834
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-- 124776
|||||||||||||| || || || ||||| || | || |||||||| || || |||
Sbjct 2074833 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTTTAAGATTTA 2074774
Query 124777 CATAAAAATTGATTGTAAATAAATATCACTACAAATAATTTTATCTGTTATTTT 124830
|||||| || || || | ||||| || | || || | ||| | ||||||
Sbjct 2074773 GATAAAAGTTAATAGTCTACTAATATATCTTCTAACAA-TGTATTTTCTATTTT 2074721
Score = 145 bits (160), Expect = 1e-29
Identities = 175/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| | || || || || || || ||||| ||||| ||
Sbjct 2075241 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075182
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || ||||| ||||||||||| ||||| ||||||
Sbjct 2075181 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075122
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | |||||||| || |||||||| || ||| || |||| || || || ||
Sbjct 2075121 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075062
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||||||||| || ||||| ||||| || | || |||||||||| ||| ||
Sbjct 2075061 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 2075004
Score = 145 bits (160), Expect = 1e-29
Identities = 175/238 (74%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| | || || || || || || ||||| ||||| ||
Sbjct 2075469 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075410
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| || || ||||| ||||||||||| ||||| ||||||
Sbjct 2075409 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075350
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | |||||||| || |||||||| || ||| || |||| || || || ||
Sbjct 2075349 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075290
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||||||||| || ||||| ||||| || | || |||||||||| ||| ||
Sbjct 2075289 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 2075232
>seq6
Length=960076
Score = 134 bits (148), Expect = 2e-26
Identities = 172/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | || || || || || ||||| || ||| |||| |||| ||
Sbjct 21802 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 21861
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| ||| | || || || ||||| || ||||| || ||||| |||||
Sbjct 21862 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 21921
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||||| | || ||||| || |||||||| || ||| || |||| || || || ||
Sbjct 21922 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 21981
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||| |||||||| ||||| || | || |||||||| ||||||
Sbjct 21982 CATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAAA 22038
>seq39
Length=2831396
Score = 100 bits (110), Expect = 4e-16
Identities = 198/293 (68%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 205618 GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatA 205677
|| ||||| |||| | || || ||||| | || ||| |||||| || || ||
Sbjct 1392358 GGGTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATT 1392417
Query 205678 ATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTA 205737
| || | || |||||||| ||||| ||||| | ||||| ||| |||||| |
Sbjct 1392418 ACATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCA 1392477
Query 205738 GCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCA 205797
||||||||||| | ||||||||| ||||||||||| || ||||||||||| | ||
Sbjct 1392478 GCACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGG 1392537
Query 205798 TTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcct 205857
| || ||| | || | || | ||| | ||||| | ||||| || | | ||||
Sbjct 1392538 GTCAATCCAAGATTGTCTAAAAATTCTCGCAGACCATTGCCCTCCCATATTTTAACTCCT 1392597
Query 205858 ttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910
|| | | | || || | || || ||||||| |||||||| || | |||
Sbjct 1392598 TTTTCACTCAAGATTTTGGCATCCGTGGATCCAGCAATAAACCACAAGAGTTC 1392650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455631715200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |