Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq6 118 8e-22 >seq15 Length=2091020 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075489 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075548 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075549 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075608 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | ||| || | ||||||| | | Sbjct 2075609 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCT 2075666 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | |||||||||||||| || |||||||||||| Sbjct 2075667 TACCGGTCAATGTTTTGACGAAAATTTGCATT 2075698 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2074805 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2074864 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2074865 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2074924 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 2074925 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 2074982 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| || ||||||||||| Sbjct 2074983 TACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075033 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075092 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075093 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075152 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 2075153 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 2075210 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| || ||||||||||| Sbjct 2075211 TACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | ||| ||||||||||||||||||||||||| || ||| ||| ||||||| Sbjct 2075261 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075320 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| | || | |||||||||||| || | ||||| || || || Sbjct 2075321 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075380 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| |||||| | || || | ||||||| | | Sbjct 2075381 ATCTTGGAT--TTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCT 2075438 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||||||||| || ||||||||||| Sbjct 2075439 TACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 >seq6 Length=960076 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 22011 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 21952 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | |||||||||||| || | |||||||| || Sbjct 21951 AATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 21892 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| | ||| ||| | |||||| |||| Sbjct 21891 ATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTA 21832 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || || | ||||| ||||| ||||||||| || Sbjct 21831 CCCGTAAGGGTTTTGACAAAGATTTGCATTCTT 21799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343819693055