Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39 343 2e-89 >seq39 Length=2831396 Score = 343 bits (380), Expect = 2e-89 Identities = 1221/1901 (64%), Gaps = 54/1901 (3%) Strand=Plus/Plus Query 62042 CAATG-TGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 62100 ||||| |||| || || | ||| || || | || ||| | | |||||||| || || | Sbjct 2507542 CAATGGTGAACTGGATAGCAGCAGAAGCAGCTTGCGTCCTCAAGTAGTACATACCTGTCT 2507601 Query 62101 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 62160 ||| || ||||||| ||||| ||||| || || | ||| | |||||| Sbjct 2507602 TTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAATTTACCCATGGTTGGATCTT 2507661 Query 62161 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62220 || || || || | ||||| ||| |||||||| || | || || | |||||| | Sbjct 2507662 TGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCAGCTCTATCAGAAGCCATAT 2507721 Query 62221 TTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 62280 || || |||||| | |||||||||| |||||| || | | ||| || || |||| Sbjct 2507722 CAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTACAATGCCTTGATTTCGTCTG 2507781 Query 62281 GAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCAT 62337 ||| ||||| | |||||||| ||| | | ||||| ||| |||| || | | Sbjct 2507782 GAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATAATGCTACTCTTCATAGCGT 2507841 Query 62338 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATT 62397 ||||||| | | | || ||| || | | | | || ||||| | ||| || | Sbjct 2507842 CATTCCAAATTCCTAAATCAACCAAATCTTTCAACAAGTATGGATTAACAATTTGAAACT 2507901 Query 62398 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62457 | |||| ||| ||||| | || ||||||||| || || || || | | ||||| | Sbjct 2507902 CACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTGTATGGCTCGAAACATTCATTGT 2507961 Query 62458 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 62517 | ||||||||||| | || || ||||| ||||| || |||||||| || ||||| | Sbjct 2507962 TACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCA 2508021 Query 62518 GACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG----- 62572 ||||| | | | || ||||| | | ||||||| ||| | || | || Sbjct 2508022 TACCGTGTTTGGCAAGCTTTTCTTTCAATTCATCCCAATCCCACAATTCAGTTGGCTTTC 2508081 Query 62573 --TACAACANNNNNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTAC 62626 | | ||| ||||| | | ||| | | |||| | | ||| Sbjct 2508082 TGTTCCACAAGTCG-------TATTGCAACAAACCTTGCGATGCTGGTG----AGCCTTG 2508130 Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAATGCACCG 62684 || || ||||| || ||||| | | | |||| || ||| | || || | ||| | Sbjct 2508131 GTAAGTTTCATAGGGACCTTCTTCCGCCGCTAATT--CAATTGATGCTTCAACAGCAGCA 2508188 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG-G 62743 | ||| || |||||||| || | |||| | || ||||| || ||||||| | Sbjct 2508189 TGATAGATTGTTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAATCAAATCCG 2508248 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 || | || | ||||| || || || || ||||| ||||| | | || ||||| || Sbjct 2508249 ATTCTCAAA-ACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAATTGGTCTGTG 2508307 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 |||| | || || | |||||||| |||| || || || || ||| || | | |||| Sbjct 2508308 TCTCATGTTTGATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAATGACTCTATT 2508367 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 | ||| | || |||||| || || | || ||| ||| | | | ||| Sbjct 2508368 CAAATTACGTGTAACAACTTTGGTGACGTCATGCAACTTGTCAAAGTTGTACCAAGCATG 2508427 Query 62924 TATTACAAACATGTTCAAT-------------GCAACAGATGCCAGATTACACACGGCTA 62970 |||| | | || ||||| |||| || |||| ||||| || || | Sbjct 2508428 C-TTACCATCCTGCTCAATAAAAGAAGGTAAAGCAATCGAAGCCAAGTTACAAACAGCAA 2508486 Query 62971 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 | |||| | ||| ||||| | || ||| || | || | | || ||| | Sbjct 2508487 CTTCATCTGGTGCCGAATATTCAACAATTTCACAACACAAGTTGGAAGATTTAATAACAC 2508546 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | ||||||| ||| || ||| ||||||| |||||||| || | |||||||| |||| Sbjct 2508547 CCAAATTTTTTTGGTTGGACTTGGTGTTACAAGCATCCTTGTACAACATGAATGGGGTAC 2508606 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 |||| ||| | || | || | || | | ||| | | |||| || ||| | || Sbjct 2508607 CAGTCTCAGTTTGTGCCTCCAAGATGGAATACCACAATTTTTGAGCTTTGATTGTC--TT 2508664 Query 63151 TGTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 | || | | | |||| | |||||| |||||| | || ||||| || || Sbjct 2508665 TCTACCACGACCTTCTTTCTCGTATTTCTCATACAACTCAACAAATTCGTCACCATAAGT 2508724 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 || |||| | ||| ||||| ||| | | ||| | ||| || || | | || || Sbjct 2508725 ATCAGCCAAGTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATCACCATTTTGCTCAAC 2508784 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || ||||||||| | ||| || ||||| | |||| || | ||||| | |||| ||| Sbjct 2508785 TCTTTTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTC 2508844 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 || || || |||||| ||| || | ||| | | ||||||| ||||| ||||| Sbjct 2508845 TTCCTTACCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTC 2508904 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 | |||| || | | | || || | ||||| || || ||||| | || | ||| || Sbjct 2508905 AAGATATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGT 2508964 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| || |||| | | ||||||||||||||| ||||| |||| |||||||| | ||| Sbjct 2508965 GTTGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGAT 2509024 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 ||| | ||| ||| |||||| || || | || || || || || |||| || Sbjct 2509025 GTAGGCACCAGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGA 2509084 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 || || || ||| ||||| |||||||| || ||||| || ||| || |||| Sbjct 2509085 AATCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGC 2509144 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 || | ||||| |||||||| | | ||| || ||||| || || ||||| Sbjct 2509145 AACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGA 2509204 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 | | || ||||| || ||| ||| | | |||||| ||||||||| || ||||| Sbjct 2509205 ACCATGAGTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAACTCTTGGGATATC 2509264 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | | ||| || || | || || | ||| | || ||| || ||||||||| ||| ||| Sbjct 2509265 TCTTCCATGGATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTCAGCAACTTT 2509324 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--T 63866 || || ||||| || ||| | ||||||||||| || ||||| || ||||| | Sbjct 2509325 TCCATTAATACGTAACAAATATGATCTCTCCAAAGTTTTGAATCCAAAGTAATTGTAGTT 2509384 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATC 63907 |||| || || || |||| ||| | || || | || ||| Sbjct 2509385 GAAA--TCACGGTCATAAACAATTGCTGAGTTTAACTCATC 2509423 Score = 320 bits (354), Expect = 2e-82 Identities = 605/880 (69%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| || | |||||| || ||||| || || || |||| || ||||| Sbjct 2634563 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2634504 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| |||||||| |||||||| |||||||||| |||||| ||||| || | Sbjct 2634503 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAAT 2634444 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 ||||| || || || ||||| | |||| ||||| | |||||||||||| | | Sbjct 2634443 AATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAAA 2634384 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||||||| | || |||||| ||||||| |||||| || || | || ||||| Sbjct 2634383 CTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAATT 2634324 Query 33531 AATCTAACGGTTTCTTCACTC-GGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | ||| | | || || ||| |||| |||||| ||||| ||| ||||| || Sbjct 2634323 CTTTCAACAATCT-TTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGCAAA 2634265 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| | ||| || || | || ||| ||||| || ||||| || | ||| ||||| Sbjct 2634264 ATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGGCAT 2634205 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || || | ||| || | ||| || |||||||| || ||||| || ||||| || || Sbjct 2634204 TAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACCCTC 2634145 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCA-C 33764 || |||||||| |||| | |||||| || ||| | || || || ||||| | Sbjct 2634144 AACAGCAGCAAAAGCAACCAATCTCTCAGCA-AACAATGCATCGGAATCTTGAATCCATC 2634086 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 | || |||||||| ||||||||||| | ||| || ||||| || ||||| || | Sbjct 2634085 TGATG-GCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATAAG 2634027 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 | | ||| || ||| || | |||||| || ||||| | ||| |||| ||| Sbjct 2634026 AAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCTGAA 2633967 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 ||||||||||| || || || || || || || || | || || | ||| || ||| Sbjct 2633966 TGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGAACT 2633907 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 || | | |||| ||| | || |||||||| || || |||||| ||| || ||||| Sbjct 2633906 TCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAAAAG 2633847 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT---TCCAATCATT 34060 ||||| | | || ||| | |||| | || || | ||| | ||||||||| Sbjct 2633846 GCCAAGATTCTTCCAATGAAAAACCTTTCAT-TGTCATTCAATTTCTCTCTCCAATCATG 2633788 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 | ||||||| || ||| | |||||| | ||||| |||||||| || ||||| || || Sbjct 2633787 AAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTGTA 2633728 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 ||| | ||| || ||||| ||| || || || || ||| Sbjct 2633727 CATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACA 2633688 Score = 100 bits (110), Expect = 4e-16 Identities = 417/643 (65%), Gaps = 24/643 (4%) Strand=Plus/Minus Query 63229 CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAG 63288 |||| ||| | | ||| ||||| || ||| | ||| |||| || |||||| | ||||| Sbjct 922203 CATCGGGAGAAAACAAAGACCAATCACCGCCGGACTTTACTCTTTGCATAAACAAATCAG 922144 Query 63289 GAATCCAAAGAGCTAT-AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347 ||||||| | | | || ||| | ||| || || | | || ||||| || ||||||| Sbjct 922143 GAATCCACA-ACCCATAAAACAAATCCCTCGTACGAAACTCTTCGTTCCCATGATTCTTT 922085 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 | | | | | | | | | ||| | |||||| || |||||||| || || | | || Sbjct 922084 CTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGGCTCCAAGTAGATAGCGAAAGCT 922025 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || || | |||| ||| || || || | |||| || ||||| || | |||| ||| Sbjct 922024 CCTGGTCTTTTGCCTCCACCTTGGTCAACATATCGGGCAGTGTTGTTGAATACTCGTAAC 921965 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATAT---AGCCTCCACTGGCA 63524 || |||| | || || | | |||||||| | || |||| ||||| ||| Sbjct 921964 ATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGGCTATATGCGAGCCT---TGGGCC 921908 Query 63525 CGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG-CGCATC 63582 | |||||| ||| ||| | || || || || | |||||| ||||| | ||| || Sbjct 921907 CTAATATTGTGAATATGA-ATTCCAATACCGCCAGAAGCTTTAGAAATTAACGCCGCTTC 921849 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAG 63641 | | ||| | |||||| || || || |||||| ||| || ||| | ||| ||| Sbjct 921848 -ATGAAGCGTTTGATAGATCCCATCAATTGAATCATCCTTCATTGCTAA-CAAAAAGCAG 921791 Query 63642 CTAGACATTTGGT--GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 || | | || ||| | | ||| |||||| ||| || || || || | | Sbjct 921790 GATGAAAGGTAGTTGTACGCGCA--TCCGGCATTATATAGTGTTGGCAGTGCATGGATGA 921733 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGT---CTCAATAGCTGAGTCTATATCCCATTGAT 63756 | |||||| || | ||| ||| || ||||| ||| | ||| || ||| | Sbjct 921732 AGTATTTTTGGGACATTAGTACGTATGTTTCCTCAACCGCT---TGTATGTCATCTTGGT 921676 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 ||||| ||| || || | | ||||||| | || ||||| | ||||||||| Sbjct 921675 GAATTTCTATAGCCACTCTGAGAAACATGTATTCTGGAGTTTCAGCTATTTTGTTGCCAG 921616 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 || || | | || || ||||||||||| || | |||||||| Sbjct 921615 TTCTCCAAAGATATGAGTTTTCCAAAGTCTTGATTCCAAAATA 921573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817292963920