Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq39 288 9e-73 >seq39 Length=2831396 Score = 288 bits (318), Expect = 9e-73 Identities = 1149/1787 (64%), Gaps = 39/1787 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| ||||| | |||| | || || | || || |||| || ||||| || || Sbjct 2507541 TCAATGGTGAACTGGATAGCAGCAGAAGCAGCTTGCGTCCTCAAGTAGTACATACCTGTC 2507600 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || ||||||| ||||| ||||| || |||| ||| | || |||| Sbjct 2507601 TTTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAATTTACCCATGGTTGGATCT 2507660 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || | | |||||| ||| || || || ||| |||| || | ||||| Sbjct 2507661 TTGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCAGCTCTATCAGAAGCCATA 2507720 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| ||||| || || |||||||| ||||| || | | || || | ||| Sbjct 2507721 TCAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTACAATGCCTTGATTTCGTCT 2507780 Query 37030 GGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | | | ||| |||||| |||||||| | | | | ||| || |||| || | Sbjct 2507781 GGAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATAATGCTACTCTTCATAGCG 2507840 Query 37087 TTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | |||||| || | ||| | | | ||| |||| | || |||||| |||| |||| Sbjct 2507841 TCATTCCAAAT--TCCTAAATCAACCAAATCTTTCAACAAGTATGGATTAACAATTTGAA 2507898 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || |||| || |||||||| | || ||||| ||| ||||| || | | |||| Sbjct 2507899 ACTCACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTGTATGGCTCGAAACATTCAT 2507958 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | |||| || ||||| |||||||| |||||||||||||| || | | | | |||| Sbjct 2507959 TGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTC 2508018 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 ||| || ||| | || | | ||| | ||||| ||||||||| || || ||||| | Sbjct 2508019 TCATACCGTGTTTGGCAAGCTTTTCTTTCAATTCATCCCAATCCCACAATTCAGTTGGCT 2508078 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | | ||||| || ||||| | | ||||| ||||| || | | || || | Sbjct 2508079 TTCTGTTCCACAAGTCGTATTGCAACAAACCTTGCGATGCTGGTGAGCCTTGGTAAGTTT 2508138 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTGCGGCATAATATAT 37442 |||| || || | |||| || ||| | | ||| | || |||| ||| || Sbjct 2508139 CATAGGGACCTTCTTCCGCCGCTAATT--CAATTGATGCTTCAACAGCAGCATGATAGAT 2508196 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||| |||||||| ||||| ||| | ||||||| | ||| ||| | | ||| Sbjct 2508197 TGTTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAATCAAATCCGATTCTCAA 2508256 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | ||||| |||||||||| || || ||||| | | || ||||| ||| || | || Sbjct 2508257 AACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAATTGGTCTGTGTCTCATGTT 2508316 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT--- 37619 ||||| | ||| ||||| || || || ||| || | | |||| | ||| Sbjct 2508317 TGATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAATGACTCTATTCAAATTACG 2508376 Query 37620 TTTAACTAGTAT--TTTCGTAAT---TATTCTC-AACTTGT--CGAACATAAATA-CGTT 37670 | |||| | | | | ||| || || || || |||| | | ||| || | | Sbjct 2508377 TGTAACAACTTTGGTGACGTCATGCAACTTGTCAAAGTTGTACCAAGCATGCTTACCATC 2508436 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 | | || ||| | || | ||| || | | ||||| |||||||||||||| | Sbjct 2508437 CTGCTCAATAAAAGAAGGTAAAGCAATCGAAGCCAAGTTACAAACAGCAACTTCATC-TG 2508495 Query 37731 GTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGC 37789 || | || ||| | ||| || ||| | || ||| |||| |||||||| Sbjct 2508496 GTGCCGAATATTCAACAATTTCACAACACAAGTTGGAAGATTTAATAACACCCAAATTTT 2508555 Query 37790 TTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTA 37849 |||| ||||| || | ||||||| ||| || || | || | || || || || Sbjct 2508556 TTTGGTTGGACTTGGTGTTACAAGCATCCTTGTACAACATGAATGGGGTACCAGTCTCAG 2508615 Query 37850 TTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA--Atttt 37907 |||| ||||| | || || | ||| || || ||||| | || | || | Sbjct 2508616 TTTGTGCCTCCAAGATGGAATACCACAATTTTTGAGCTTTGATTGTCTTTCTACCACGAC 2508675 Query 37908 tttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA--CATCGCAT 37965 ||||| | ||||||| ||| || | ||| || | | ||||| ||| Sbjct 2508676 CTTCTT--TCTCGTATTTCTCATACAACTCAACAAATTCGT--CACCATAAGTATCAGCC 2508731 Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || |||| ||| |||| | | | | ||| || ||| || || || | || | Sbjct 2508732 AAGTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATCACCATTTTGCTCAACTCTTTTC 2508791 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 ||||| ||||| || | ||| || || | || || ||| | | |||| |||||| || Sbjct 2508792 ATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTCTTCCTTA 2508851 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTC--TATAT 38143 || |||||||| | | || || || |||||||||||||||||||| |||| Sbjct 2508852 CCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTCAAGATAT 2508911 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 ||| | | | || |||||||| || | ||| || |||| | ||| | | | ||||| | Sbjct 2508912 AAAGCAAAA--GCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGTGTTGT 2508969 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | | | ||| || | |||||||| || | ||||| |||| | || || | Sbjct 2508970 TGAAAACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGATGTAGG 2509029 Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323 ||| | | || || || || |||||| || ||||| ||| |||||| || | Sbjct 2509030 CACCAGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGAAATCA 2509089 Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383 | || ||| ||||| || ||| | |||||||| ||| || || || |||| | | Sbjct 2509090 AGGCACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCA 2509149 Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 |||||| |||||||| || |||||| ||||| || || || ||||| ||| Sbjct 2509150 AGAAACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGAACCAT 2509209 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT-CTATATCACCG 38502 | | || || ||| |||| |||| || || || || || || | ||||| | Sbjct 2509210 GAGTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAAC-TCTTGGGATATCTCTT 2509268 Query 38503 CCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || ||||| | || || ||||| | || |||||||||||||| Sbjct 2509269 CCATGGATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTC 2509315 Score = 251 bits (278), Expect = 7e-62 Identities = 589/881 (67%), Gaps = 16/881 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||| || ||| ||||| | ||| || ||||| |||||||| | | || |||| Sbjct 2634564 CTTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATT 2634505 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||||||| ||| ||||| |||||| | ||||||| ||| || | || Sbjct 2634504 CTCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAA 2634445 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 |||||| || || || ||||| | ||| ||| |||| || ||||||||| || | | Sbjct 2634444 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAA 2634385 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || || | ||| | || || || || ||||| || | ||| || ||| | || || Sbjct 2634384 ACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAAT 2634325 Query 11578 CGACGTTATAACTTCCTTAGAT--GGTGGATGTAATAAATGTTTAAACATTAAACACGCA 11635 | || | || || | | ||| |||| |||||| ||||| || || ||| Sbjct 2634324 T--CTTTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGCA 2634267 Query 11636 AAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGC 11695 |||||| ||||||||||| || | || || | |||||| ||||| || ||||| ||| Sbjct 2634266 AAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGGC 2634207 Query 11696 ATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 || ||||||| || || | ||| || || | |||||| || ||| || || || ||| Sbjct 2634206 ATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACCC 2634147 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCA---TATACCT-TGTTGCTAGATATCCA 11811 || ||||| ||||| || || | ||| || || || | | | || || ||||| Sbjct 2634146 TCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACAATGCATCGGAATCTTGA-ATCCA 2634088 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 | | ||||||||||||| |||||||| | || ||||| ||||| || ||||| Sbjct 2634087 TCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATAA 2634028 Query 11872 ATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | | | ||| | ||| | | ||| || || || ||||| ||| ||||| Sbjct 2634027 --GAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCT 2633970 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 |||||||| |||||||| ||||| || ||||| || || || || | | || Sbjct 2633969 GAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGA 2633910 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || || || |||| ||||| | || || ||||| |||||||||||| | || ||| Sbjct 2633909 ACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAA 2633850 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC---CCAATCA 12106 || || | || | || || | |||| | | | | ||||| || ||||||| Sbjct 2633849 AAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTCCAATCA 2633790 Query 12107 TCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTA 12166 | | |||||| |||||| | |||||| | ||||| || ||| | | | || Sbjct 2633789 TGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTG 2633730 Query 12167 TACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 ||||||| ||| || ||||| || ||||||| || || || Sbjct 2633729 TACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGAC 2633689 Score = 104 bits (114), Expect = 2e-17 Identities = 291/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 || || || ||||| || || |||| |||| | ||||| | ||| || |||||| Sbjct 923062 TTCACCACTTGAAATTCGCCTGATATCACTCGACGAGTATACAAGTTGGAGGTGTATGGT 923003 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 || | ||||||| | ||| ||||||||||| || ||||||||||| || |||| | Sbjct 923002 TCGAAACACTCATTGAACCCTAAGATTTGAGATGTTGAAGCAGTAGGCATGGGAGCTACT 922943 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATC-CCA 37310 | ||| |||||||| ||||| | | | | | ||||| | || ||| || || Sbjct 922942 AAAAGTGAGTTTCTCAACCCATGACTCCTCACATTATCTTTTAACTGATCCCAGTCATCA 922883 Query 37311 TAAATCTGTTGGGTTCTTTA-ACCACATATCATATTGTAGAATACCTTTACTCGCTGGAG 37369 || | | | |||| || | |||||||||| |||| | ||| |||| ||||||| Sbjct 922882 TAGAATTCT--GGTTTTTGATTCCACATATCAAATTGCAAAATGCCTTGCGAAGCTGGAG 922825 Query 37370 AATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAG 37427 | | | | || ||||| || | || | ||| || || ||| | | |||| Sbjct 922824 ATCCAGCAAAGGTTGAGTAAGGACCCTCAAGTATAGATAATT--CAAGTGAGGCCTCTAC 922767 Query 37428 TGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC 37487 || |||| ||| || ||||| || ||||| ||| | | |||| || ||| || Sbjct 922766 AGCAGCATGATAGATGGTTTCAAAGATTTGCGAATTGAGTTTTTTAGCCTCTAGAGAGTC 922707 Query 37488 GAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 |||| | | |||| | ||| | |||||| | ||| || || || ||| |||| || Sbjct 922706 AAATGGTAACCTCAATTCGAGAAATAAATCAGCTAGACCTTGTACGCCTATAGCTATTGG 922647 Query 37548 TCTATGTTTCTTATTAGATCT 37568 || || || || || ||||| Sbjct 922646 TCGATTCTTTTTGTTTGATCT 922626 Score = 102 bits (112), Expect = 8e-17 Identities = 384/598 (64%), Gaps = 6/598 (1%) Strand=Plus/Minus Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 ||| | || |||||| |||||||| | ||| || || ||| ||||| | || | | | Sbjct 922166 TACTCTTTGCATAAACAAATCAGGAATCCACAACCCATAAAACAAATCCCTCGTACGAAA 922107 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||||||||| ||||||||| | | ||| || || || | ||| || ||||| || Sbjct 922106 CTCTTCGTTCCCATGATTCTTTCTCATGTTTAAAATCTCAAACACATCGGCATGCCAAGG 922047 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 || | || || | | |||||||||||||| | || || || | || ||||| | Sbjct 922046 CTCCAAGTAGATAGCGAAAGCTCCTGGTCTTTTGCCTCCACCTTGGTCAACATATCGGGC 921987 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 ||||| || ||| || |||||| || |||| ||| | | | || || | | || Sbjct 921986 AGTGTTGTTGAATACTCGTAACATGGGAACTACTCCACCTGCTCTTCCATTGGTGCTGGC 921927 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 ||||| | || | || | ||||| || | ||| || || || | | ||| Sbjct 921926 TATATGCGAGCCTTGGGCCCTAATATTGTGAATATGAATTCCAATACCGCCAGAAGCTTT 921867 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || ||||| || || | | ||| | | | || || || || |||||||| || Sbjct 921866 AGAAATTAACGCCGCTTCATGAAGCGTTTGATAGATCCCATCAATTGAATCATCCTTCAT 921807 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 || || | ||| || || | | | | |||||| ||| ||| ||| || Sbjct 921806 TGCTAACAAAAAGCAGGATGAAAGGTAGTTGTACGCGCATCCGGCATTATATAGTGTTGG 921747 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTA--TATGTTTCTATTACATCATCT 38493 |||||| ||||| |||||| ||| || | || |||||||| || | | | Sbjct 921746 CAGTGCATGGATGAAGTATTTTTGGGAC--ATTAGTACGTATGTTTCCTCAACCGCTTGT 921689 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 || ||| | |||||| ||| || || || | | ||| | || ||| |||| | Sbjct 921688 ATGTCATCTTGGTGAATTTCTATAGCCACTCTGAGAAACATGTATTCTGGAGTTTCAGCT 921629 Query 38554 ATTTTATTATTCTGTT-TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 ||||| || | ||| | ||||| || ||||| || || || |||||||||||| Sbjct 921628 ATTTTGTT-GCCAGTTCTCCAAAGATATGAGTTTTCCAAAGTCTTGATTCCAAAATAA 921572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524571594160