Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq39 318 8e-82 >seq39 Length=2831396 Score = 318 bits (352), Expect = 8e-82 Identities = 604/881 (69%), Gaps = 16/881 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| || | |||||| || ||||| ||||| || |||| || ||||| Sbjct 2634563 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2634504 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| |||||||| |||||||| ||||| |||| |||||| ||||| || | Sbjct 2634503 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAAT 2634444 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 ||||| || || | ||||| | |||| ||||| | |||||||||||| | | Sbjct 2634443 AATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAAA 2634384 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||||||| | || |||||| ||||||| |||||| || || || || ||||| Sbjct 2634383 CTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAAT- 2634325 Query 42014 GATCTT---ACTGTTTCTTCACTC-GGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 |||| || | | || || ||| || |||||| ||||| ||| ||||| Sbjct 2634324 --TCTTTCAACAATCT-TTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGC 2634268 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| ||| | ||| ||||| | || ||| ||||| |||||||| || | ||| || Sbjct 2634267 AAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGG 2634208 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||||| || | ||| || | ||| || || || ||||| |||||| || ||||| || Sbjct 2634207 CATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACC 2634148 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCA 42246 || || || ||||| |||| | |||||| || | ||| | || || ||||| Sbjct 2634147 CTCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACAATGCATCGGAATCTTGAATCCA 2634088 Query 42247 -CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 || || |||||||| ||||||||||| | ||| || ||||| || ||||| || | Sbjct 2634087 TCTGATG-GCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATA 2634029 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | | ||| || ||| || | ||| || || ||||| | ||| |||||| Sbjct 2634028 AGAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCTG 2633969 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 ||||||||||||| || || || || || || || || |||| || | || || | Sbjct 2633968 AATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGAA 2633909 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 |||| | | |||| ||| | || ||||| || || || || ||| ||| || |||| Sbjct 2633908 CTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAAA 2633849 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT---TCCAATCAT 42542 | ||||| | | || ||| | |||| | | ||||| | ||||||||| Sbjct 2633848 AGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTCCAATCAT 2633789 Query 42543 TGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 | ||||||| || ||| | ||||||| | ||||| ||||||||||| ||||| || | Sbjct 2633788 GAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTGT 2633729 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACA 42643 |||| | ||| || ||||| ||| ||| || || || ||| Sbjct 2633728 ACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACA 2633688 Score = 307 bits (340), Expect = 1e-78 Identities = 1198/1874 (64%), Gaps = 36/1874 (2%) Strand=Plus/Plus Query 70797 CAATG-TAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTT 70855 ||||| | ||||| || | || || || |||| ||| | | |||||||| ||||| | Sbjct 2507542 CAATGGTGAACTGGATAGCAGCAGAAGCAGCTTGCGTCCTCAAGTAGTACATACCTGTCT 2507601 Query 70856 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGG 70915 ||| || ||||||| ||||| ||||| || || | ||| | | ||||| Sbjct 2507602 TTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAATTTACCCATGGTTGGATCTT 2507661 Query 70916 CTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 70975 |||||||| || | || || ||| |||||||| || | || || | |||||| | Sbjct 2507662 TGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCAGCTCTATCAGAAGCCATAT 2507721 Query 70976 TTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTG 71035 || || |||||| | |||||||||| |||||| || | | ||| || || |||| Sbjct 2507722 CAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTACAATGCCTTGATTTCGTCTG 2507781 Query 71036 GAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTT 71092 ||| ||||| | |||||||| ||| | || |||||| ||| | || || | | Sbjct 2507782 GAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATAATGCTACTCTTCATAGCGT 2507841 Query 71093 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATT 71152 ||||||| | | | || ||| || | | | | |||||||| | |||||| | Sbjct 2507842 CATTCCAAATTCCTAAATCAACCAAATCTTTCAACAAGTATGGATTAACAATTTGAAACT 2507901 Query 71153 CTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTAT 71212 | |||| ||| ||||| | || ||||||||| || || || || | | ||||| | Sbjct 2507902 CACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTGTATGGCTCGAAACATTCATTGT 2507961 Query 71213 TTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAA 71272 | ||||||||||| | || || ||||| ||||| || |||||||| | ||||| | Sbjct 2507962 TACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGAGCCACCAACAAGGAGTTTCTCA 2508021 Query 71273 GACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 ||| ||| | || | || ||||| | ||||||| ||| | || | ||| Sbjct 2508022 TACCGTGT--TTGGCAAGCTTTTCTTTCAATTCATCCCAATCCCACAATTCAGTTGGCTT 2508079 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTA-GCGTATGATCCTGCATATGTAT 71389 | || || | | || ||| ||| || || | Sbjct 2508080 TCTGTTCCACAAGTCGTATTGCAACAAACC-TTGCGATGCTGGTGAGCCTTGGTAAGTTT 2508138 Query 71390 CGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGG 71449 | || || ||||||| | |||| |||| || || | || ||| ||| || | Sbjct 2508139 CATAGGGACCTTCTTCCGCCGCTAATTCAATTGATGCTTCAACAGCAGCATGATAGATTG 2508198 Query 71450 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG-GATAATTTAAG 71508 |||| ||||| | |||| | || ||||| || ||||||| ||| | || Sbjct 2508199 TTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAATCAAATCCGATTCTCAAA- 2508257 Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 | ||||| || || || || ||||| || || | | || |||||||||||| | || Sbjct 2508258 ACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAATTGGTCTGTGTCTCATGTTT 2508317 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || | |||||||| |||| || || || || ||| || | | |||| | ||| | Sbjct 2508318 GATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAATGACTCTATTCAAATTACGT 2508377 Query 71629 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAAT-----CAA--ATC--TCCCATCT 71679 | |||||| || || | | ||| ||| | ||| || | ||||| Sbjct 2508378 GTAACAACTTTGGTGACGTCATGCAACTTGTCAAAGTTGTACCAAGCATGCTTACCATCC 2508437 Query 71680 -----ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | || || | || || |||| || |||| |||||||| || || |||| | Sbjct 2508438 TGCTCAATAAAAGAAGGT--AAAGCAATCGAAGCCAAGTTACAAACAGCAACTTCATCTG 2508495 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | ||||| | ||||||| || | || | | || || || ||||||| Sbjct 2508496 GTGCCGAATATTCAACAATTTCACAACACAAGTTGGAAGATTTAATAACACCCAAATTTT 2508555 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||| || ||| ||||||| |||||||| || | || || || |||||||| ||| Sbjct 2508556 TTTGGTTGGACTTGGTGTTACAAGCATCCTTGTACAACATGAATGGGGTACCAGTCTCAG 2508615 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCT 71914 | || | || | || | | ||| | | |||| || ||| | || | || | | Sbjct 2508616 TTTGTGCCTCCAAGATGGAATACCACAATTTTTGAGCTTTGATTGTCTT--TCTACCACG 2508673 Query 71915 T--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 |||| | ||||||| ||| || | || ||||| || ||| || | || Sbjct 2508674 ACCTTCTTTCTCGTATTTCTCATACAACTCAACAAATTCGTCACCATAAGTATCAGCCAA 2508733 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 ||| |||||| ||| | | ||||| ||| || |||| | | |||| |||||| Sbjct 2508734 GTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATCACCATTTTGCTCAACTCTTTTCAT 2508793 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 72092 ||| | ||| || ||||| | |||| || | ||||| | |||| || || || || Sbjct 2508794 AAACAAATCTGGGATCCACAAAGCTGGGAACAAGTCTCTAGCTCTAATTTCTTCCTTACC 2508853 Query 72093 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 72152 |||||| ||| || | ||| | | ||||||| ||||| ||||| | |||| Sbjct 2508854 ATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATCAGCGTGCCATGGTTCAAGATATAA 2508913 Query 72153 GGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 72212 || | | | || || | ||||| || || ||||| | || | ||| ||||| || | Sbjct 2508914 AGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCCACATAACGAGCAGTGTTGTTGAA 2508973 Query 72213 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 72272 ||| | | |||||||||||||||||| || | ||| ||||| || | ||| ||| || Sbjct 2508974 AACACGAACCATTGGAATAATACCATTTGAAGTACCGTTGGTACCAGCGATGTAGGCACC 2509033 Query 72273 ACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 72332 | ||| |||||| ||| || | || || || || || |||| || || || || Sbjct 2509034 AGTGGAACGAATGTTGTGGATATGCAATCCAATACCACCAGCACTTTTTGAAATCAAGGC 2509093 Query 72333 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 72392 ||| ||||| || ||||| || || || ||| ||| || |||| || | || Sbjct 2509094 ACATGTCTTTAAAGTGTCATAAATACCTTCAATAGAATCTTCTTTCATTGCAACCAAGAA 2509153 Query 72393 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 72452 ||| |||||||| | ||| || ||||| || || |||||| | || || Sbjct 2509154 ACAAGATGACATTTGTGGTTTTGGAGTACCGGCATTGAACAAACATGGAGAACCATGAGT 2509213 Query 72453 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 72512 ||| || ||| ||||| | |||||| ||||||||| || | ||||| | | ||| Sbjct 2509214 AAAGTATCTTTGAGACATCAAATTGTAAGTCTCAATAACTCTTGGGATATCTCTTCCATG 2509273 Query 72513 TATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTAT 72572 || || | || || | ||| | || || || ||||||||| | | || ||| || Sbjct 2509274 GATACCAATAGCAACTCTCATAATCAAGTGTTGTGGTCTTTCAGCAACTTTTCCATTAAT 2509333 Query 72573 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCT 72630 ||||| || ||| | ||||||||||| || ||||| || ||||| ||||| || Sbjct 2509334 ACGTAACAAATATGATCTCTCCAAAGTTTTGAATCCAAAGTAATTGTAGTTGAAA--TCA 2509391 Query 72631 CGTTCGTAAATAAT 72644 || || |||| ||| Sbjct 2509392 CGGTCATAAACAAT 2509405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138872819640