Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq39 136 5e-27 seq14 89.7 6e-13 >seq39 Length=2831396 Score = 136 bits (150), Expect = 5e-27 Identities = 179/246 (73%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 7007 CATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCT--ATATCAGATGG 7064 ||||||| || || || ||||||||||| || || | | | | | | ||| | ||| Sbjct 1392302 CATAAAACTGGCAAAAGACATGACATGGGGGCAACGC--CATCAACAGGAAATCCGGTGG 1392359 Query 7065 ATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAAT 7124 |||||||| | ||| | || | |||||||| |||||| |||||||| || | || | Sbjct 1392360 GTTCCAAGCTGACATGATGATTCTTCTATCATATGGATTAGTTTTTAACTTCTTAATTAC 1392419 Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184 ||| || ||||| | ||| || || ||| | ||||| |||| | |||| | ||| Sbjct 1392420 ATCTTGCAACTGATCAAAACCTTGGCCAGTATAGTCAGTATCGCAATCTTTATATTCAGC 1392479 Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATT 7244 |||||||| ||||||||||||||||||| || || ||||||||||| |||||| | Sbjct 1392480 ACCAAAATGCCTCCATTGAAACCCATAAACTGGTCCCAAATCACCTTCACGACGATGGGT 1392539 Query 7245 AAATCC 7250 ||||| Sbjct 1392540 CAATCC 1392545 Score = 127 bits (140), Expect = 2e-24 Identities = 216/306 (71%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATCTAACAATT-CAAAATCTTCAAATTTAAAATCAC--ATAAATT- 6755 |||| ||| | ||| || ||||||| ||||||||||||||||||||||| ||| || Sbjct 1391914 GGATAAGGTTCATA-TCCAACAATTTCAAAATCTTCAAATTTAAAATCATCAATAGTTTT 1391972 Query 6756 -ATCAGACtttttttttAAT-----ATTAC-AACAGGTGAAG--GTTTTATTGATCGAGT 6806 || | |||| ||| | || || || | ||| ||||| | || || Sbjct 1391973 AATTGCATCTTTTCTTTCTTCCTTGATCACCAATTTGGGAAATTGTTTTGGTATTCTTGT 1392032 Query 6807 TAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATG 6866 | |||||| |||| || | |||||||||||||| | ||| ||||| || | ||||| Sbjct 1392033 CATTTGTTCCTTTAATGCATCAATATGATCTAAATATACATGGGCATCACCCAAGGTATG 1392092 Query 6867 AATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATA 6926 |||||||| || | |||||| || | ||||||| | | ||| | ||||||||| Sbjct 1392093 GATAAATTCTCCACAATCCATATCCACCACATGAGCAACCATCTTTGTGAGTAATGCATA 1392152 Query 6927 AGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACA 6986 || || | ||| ||||||||||| || |||||||| ||||||||||| || ||| Sbjct 1392153 TGATGCAATATTGAAAGGTACACCCAAGCCCATATCACACGATCTTTGATATAATAAACA 1392212 Query 6987 AGATAA 6992 ||||| Sbjct 1392213 GGATAA 1392218 >seq14 Length=365783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 19352 AAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGT 19411 ||| ||||| |||| ||||| || ||||| ||| || ||||||||| || |||| Sbjct 101796 AAAGTACCTCAAATTGGTGACAAATTTGCATCTAGACATGGTCAAAAAGGTACCATTGGT 101737 Query 19412 ATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATT 19471 | | || | || || ||||||||||| || || ||||| || || ||||| || Sbjct 101736 GTTACATACAGACATGAGGATATGCCTTTCACAGCTGAAGGTATTGTCCCCGATCTAATC 101677 Query 19472 ATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||||||||||||| ||||| || ||||| Sbjct 101676 ATTAACCCACATGCTATTCCATCGCGTATGAC 101645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871709512400