Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 172 5e-38 seq15 138 1e-27 >seq6 Length=960076 Score = 172 bits (190), Expect = 5e-38 Identities = 183/240 (76%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 |||||| | || |||||||||| |||||||||||||||||||||||||||||| | ||| Sbjct 22037 TTTTAC-CACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 21979 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || ||| || ||| | ||| |||| ||||| || ||||||| |||||||| ||| Sbjct 21978 TAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 21919 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||| || || ||||| ||||| | || || | |||||| | | | ||||||| Sbjct 21918 TCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAT 21859 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || | ||||||||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 21858 GACTCAACTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATTCTT 21799 >seq15 Length=2091020 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||||||||| || ||||| ||||| | | Sbjct 2075003 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATG 2075062 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| | ||| |||| ||||| || |||| || |||||||| Sbjct 2075063 TTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGT 2075122 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||||||||||||||| | || || | ||||| | | | |||||| Sbjct 2075123 TGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCT 2075182 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || | ||||| || || || ||||| Sbjct 2075183 GATGATTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||||||||| || ||||| ||||| | | Sbjct 2075231 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATG 2075290 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| | ||| |||| ||||| || |||| || |||||||| Sbjct 2075291 TTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGT 2075350 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||||||||||||||| | || || | ||||| | | | |||||| Sbjct 2075351 TGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCT 2075410 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || | ||||| || || || ||||| Sbjct 2075411 GATGATTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||||||||| || ||||| ||||| | | Sbjct 2075459 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATG 2075518 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| | ||| |||| ||||| || |||| || |||||||| Sbjct 2075519 TTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGT 2075578 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||||||||||||||| | || || | ||||| | | | |||||| Sbjct 2075579 TGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCT 2075638 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || | ||||| || || || ||||| Sbjct 2075639 GATGACTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075697 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 |||| ||| | || |||||||||| |||||||||||| || || ||||| ||||| | | Sbjct 2074775 AAATCTTAAAAACCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATG 2074834 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| | ||| |||| ||||| || |||| || |||||||| Sbjct 2074835 TTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGT 2074894 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||||||||||||||| | || || | ||||| | | | |||||| Sbjct 2074895 TGATCTGGTGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCT 2074954 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || | ||||| || || || ||||| Sbjct 2074955 GATGATTCAACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290981458040