Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq39 260 1e-64 >seq39 Length=2831396 Score = 260 bits (288), Expect = 1e-64 Identities = 635/956 (66%), Gaps = 30/956 (3%) Strand=Plus/Minus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt---------GACA 21173 || |||| ||||| |||| |||| ||| |||| | ||||| ||| | || Sbjct 2634634 TTTTTTAGAAATCTTCATCAAATGCAAAATCATTGGCATCTTTATTTTCACTCTTGGCCA 2634575 Query 21174 TAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCA 21233 | | || ||||| |||||| |||||||||||| || ||||| ||||| || ||| Sbjct 2634574 TGACACCAGCCTTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCA 2634515 Query 21234 ATGATATAGATTCCATAAAATCAAATGGATTT-TCAGATT-TAAA-TATTTTATTACAAC 21290 | || ||| |||||||||||||||||||| | | ||| |||| | |||| |||| Sbjct 2634514 AGGAGATATTCTCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTAC--- 2634458 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||| | |||||||| || || |||||||| | |||||||||||| || | ||||| Sbjct 2634457 CCAAAGCAACCAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAAT 2634398 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || | ||| | || || | || | || || || |||||| || || | Sbjct 2634397 TCATTCCCAACAAACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTG 2634338 Query 21411 CTTCAACAATTATATTT---ATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAA 21467 ||||| ||| || || | ||| | | || ||| || ||| || || Sbjct 2634337 CTTCAGTAATAATTCTTTCAACAATCTTTGG-GTC--AGGTCTATGTTGTAAATGAGCAA 2634281 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| ||| |||||||||||| || ||||||||||| | || || |||||||| |||| Sbjct 2634280 ACAACAAGCATGCAAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAA 2634221 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC--C 21585 | || || || ||||||||||||||||| || ||||| || || || ||||| | || | Sbjct 2634220 AGGTCAATCCTGGCATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCAC 2634161 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||||| || || |||||||| |||||||| ||||| |||| ||| | | | || Sbjct 2634160 TGAAA--AAGATACCCTCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACAATGCATC 2634103 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 ||| |||||| | ||||| | ||||| | |||||| | || || || Sbjct 2634102 GGAATCTTGAATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTC 2634043 Query 21706 AATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||||| || || |||| || ||| | | ||| | || Sbjct 2634042 AATAGCATTGAATAAGA-AATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATA 2633984 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 ||| |||| ||||| || ||||| ||| || || || || ||||| || | | Sbjct 2633983 ATGAATAAGTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGG 2633924 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 | || | | |||||| || | | |||| || ||||||||||||| || || |||| Sbjct 2633923 CTTCAGGAATTTGAACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCAT 2633864 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 || ||| || ||||| ||||| || || || ||| | | ||| || || | |||| Sbjct 2633863 CAGAGGCAGCGAAAAAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATT 2633804 Query 21945 T---TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAG 22001 | | ||||||| | |||||| |||||| | |||||| | ||||| || | Sbjct 2633803 TCTCTCTCCAATCATGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATG 2633744 Query 22002 CAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 | |||||| || ||||| ||| || |||| ||| | || ||||| || ||| Sbjct 2633743 CTTCAGCCTTCTTGTACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACA 2633688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900540698360