Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq15 156 4e-33 seq6 132 4e-26 seq39 87.8 2e-12 >seq15 Length=2091020 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || ||| | | Sbjct 2075013 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2074954 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || || |||||||| || ||||||||||| |||||| Sbjct 2074953 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2074894 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 2074893 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2074834 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||||||||||||||| |||| || || ||| ||||| | || |||||| Sbjct 2074833 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGTTTT 2074783 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || ||| | | Sbjct 2075241 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075182 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || || |||||||| || ||||||||||| |||||| Sbjct 2075181 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075122 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 2075121 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075062 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || || ||| ||||| | || ||| Sbjct 2075061 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075014 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || ||| | | Sbjct 2075469 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075410 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || || |||||||| || ||||||||||| |||||| Sbjct 2075409 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075350 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 2075349 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075290 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || || ||| ||||| | || ||| Sbjct 2075289 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075242 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || |||||||| || |||| | || || || | | Sbjct 2075697 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCATCA 2075638 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || ||||| || || |||||||| || ||||||||||| |||||| Sbjct 2075637 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075578 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | || | ||||| |||||| Sbjct 2075577 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075518 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||||||||| | || || || ||| ||||| | || ||| Sbjct 2075517 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075470 >seq6 Length=960076 Score = 132 bits (146), Expect = 4e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 22213 GTAAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||||||| ||||||| ||||| ||||| | || |||||||| ||||| | ||||| || Sbjct 21796 GTAAAGAATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGA 21855 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | | || ||| | ||| || |||| || || ||||||||||| || || ||||| Sbjct 21856 GTCATCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACC 21915 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||||||| | | || ||||| || ||||| || || ||| | || | ||||| Sbjct 21916 AGATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGA 21975 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||||| ||||| || | || || || ||| ||||| | || ||| Sbjct 21976 CTACAACATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 22030 >seq39 Length=2831396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 129117 CAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTT 129176 ||||||| || | | |||||| ||||| ||||| || | | | |||||| || Sbjct 2507876 CAAGTATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGAGTAAATATTTGA 2507935 Query 129177 GGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCAT 129236 ||| | ||||| || |||||||||| || || ||||| | || | || || ||||| Sbjct 2507936 AGTGTATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCAT 2507995 Query 129237 GTAAGCCACGCAAAGCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGT 129296 |||||| | | ||||||| || |||||| | || | || ||| |||| Sbjct 2507996 TGGAGCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTCTTTCAATTCATC 2508055 Query 129297 CCAGTCCCACA-TCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACC 129350 ||| ||||||| | | ||| | | || |||||||||||||||||||| | ||| Sbjct 2508056 CCAATCCCACAATTCAGTTGGCTTTCTG-TTCCACAAGTCGTATTGCAACAAACC 2508109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727800498035