Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 2e-15 seq6 87.8 1e-12 >seq15 Length=2091020 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| ||| ||||||||| || || || |||| | Sbjct 2075015 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 2075074 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 2075075 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 2075134 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | | || ||| || ||||||| ||| | Sbjct 2075135 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATA--GTGTCTGATGATTCAA 2075192 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 2075193 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| ||| ||||||||| || || || |||| | Sbjct 2075243 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 2075302 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 2075303 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 2075362 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | | || ||| || ||||||| ||| | Sbjct 2075363 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATA--GTGTCTGATGATTCAA 2075420 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 2075421 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || || ||| ||||||||| || || || |||| | Sbjct 2074787 CCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 2074846 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 2074847 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 2074906 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | | || ||| || ||||||| ||| | Sbjct 2074907 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATA--GTGTCTGATGATTCAA 2074964 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 2074965 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| ||| ||||||||| || || || |||| | Sbjct 2075471 CCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGAC 2075530 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | |||| ||||||||||| || ||||||| || | || ||||| | || Sbjct 2075531 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 2075590 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || || | | || ||| || ||||||| || | Sbjct 2075591 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATA--GTGTCTGATGACTCAA 2075648 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || ||||| || || ||||| ||||| || ||||| Sbjct 2075649 CCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075697 >seq6 Length=960076 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574 |||||||||||||||| ||||| ||||| ||||| || || || || ||| ||| Sbjct 74111 TTACCTAAATCACCAACATGTCTTTCTTGATCATCTGGCCCACCATGGGTCTTACTAAAT 74170 Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 || || ||||| |||||| || || |||||||||||| | || |||||| |||| Sbjct 74171 GGGTTGAAATGAGGACCAGCTGAGGTGCATCCATTGGTGTTGTCACCAAATGCATG 74226 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGT-GTTCTTTATG 42570 ||||||||||||||||||| |||| ||| ||||| | || | |||| | |||| | Sbjct 84596 ATGTTACCTAAATCACCAACGTGTCTTTCATCATCTTCTGGAGCACCGTGGGTCTTGCT- 84654 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 ||| || || ||||| |||||| || ||||||||||||||| | || |||||| |||| Sbjct 84655 AAATGGGTTGAAATGAGGACCAGCTGAGGTACATCCATTGGTGTTGTCACCAAATGCATG 84714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369434890887