Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq39 403 2e-107 >seq39 Length=2831396 Score = 403 bits (446), Expect = 2e-107 Identities = 641/911 (70%), Gaps = 9/911 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||||||||||||||||||| || || || | || || ||| Sbjct 2634563 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2634504 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||||||||||||||| | ||||| || | ||||||| || || | | | | Sbjct 2634503 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAACCAAT 2634444 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | ||| || || ||||||| || |||| ||||| | |||||||||||| | || Sbjct 2634443 AATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAAA 2634384 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 |||| || | |||||| |||| ||||||| ||| || | ||||| || | ||||| Sbjct 2634383 CTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAATT 2634324 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA 18969 | |||| | | | | ||| | | | | ||| ||||| ||| ||||||||| Sbjct 2634323 CTTTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGAGCAAACAACAAGCATGCAAAA 2634264 Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029 ||| |||| || || || | || ||||||||||| ||||| || || || ||||| Sbjct 2634263 TCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGGCATT 2634204 Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089 | |||||| || || |||||||| || |||||||| |||||| || || ||||| || Sbjct 2634203 AATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGATACCCTCA 2634144 Query 19090 ACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATTT 19148 || || ||||||||||| | ||| || || ||| | ||||| || ||||||||| | Sbjct 2634143 ACAGCAGCAAAAGCAACCAATCTCTCAGCA-AACAATGCATCGGAATCTTGAATCCATCT 2634085 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 | |||||||||||||||||||| | || || || || |||| ||| |||| | | Sbjct 2634084 GATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATTGAATA-AGA 2634026 Query 19209 CATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 || || || | || ||| || | ||| | || |||||||| || ||||||||| Sbjct 2634025 AATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGTTTCTGAAT 2633966 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 |||| ||||| || || || || || ||||| || | ||||| | || || |||| Sbjct 2633965 GAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAATTTGAACTT 2633906 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | |||| |||| ||||| ||||||||||| || |||||| || || ||||| | Sbjct 2633905 CAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGCGAAAAAGG 2633846 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTAT---TCCAATCATTA 19443 | || | | ||| ||| |||||| || || ||| | | ||||||||| | Sbjct 2633845 CCAAGATTCTTCCAATGAAAAACCTTTCAT-TGTCATTCAATTTCTCTCTCCAATCATGA 2633787 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 | ||||||| |||||| | |||||| | ||||| || || || || || || || ||| Sbjct 2633786 AGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTTCTTGTAC 2633727 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 || | ||| || ||| | ||| |||||||| || ||| | | | ||| ||||| || Sbjct 2633726 ATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACATAACGACGTTTGTTTTCCTTC 2633667 Query 19564 AGAATAGGTTC 19574 | || ||||| Sbjct 2633666 AAAAGTGGTTC 2633656 Score = 304 bits (336), Expect = 1e-77 Identities = 1178/1854 (64%), Gaps = 55/1854 (3%) Strand=Plus/Plus Query 47019 AAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAAT 47078 || || |||||||| |||||||| ||| |||||||||| || ||||| || || ||| Sbjct 2507583 AAGTAGTACATACCTGTCTTTAATCCTTTCTTCCATCCATAAAAGTGCATGCTTGTCAAT 2507642 Query 47079 TTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCA 47138 ||| | || ||| || ||||| || | ||||| || || || |||||| Sbjct 2507643 TTACCCATGGTTGGATCTTTGATGTGAATGTTTAATGATTGTGATTGGTCGATGAATGCA 2507702 Query 47139 CCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAA 47198 ||||||||| |||||||| | ||| | |||| | || ||||| || ||||| || Sbjct 2507703 GCTCTATCAGAAGCCATATCAATAATGTGCTTTTGCGAGATTTCCCAAACAGTTTTGTAC 2507762 Query 47199 ATTTGTTTAATGTCTTCTGGGAGATTAGT---ATTTTGAATAGATCCTCCgttttctata 47255 | | || || || ||||| | || | | |||||| || || |||| ||| Sbjct 2507763 AATGCCTTGATTTCGTCTGGAATGTTTGGCAAAGCTTGAATGGAACCATTGTTTGAAATA 2507822 Query 47256 attttgttttttaat---tcatttgaccaaagttttcgttcagttaatgtttttaaAAGA 47312 || | | || | ||||| ||||| | | ||| || ||| || | Sbjct 2507823 ATGCTACTCTTCATAGCGTCATT---CCAAATTCCTAAATCAACCAAATCTTTCAACAAG 2507879 Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 | ||||||||||||||||| || |||| | ||||| | || ||||| || Sbjct 2507880 TATGGATTAACAATTTGAAACTCACCAGCCAACACTCTTCTAGAGTAAATATTTGAAGTG 2507939 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432 ||||| || | | ||||||| || || |||||||| | || || || |||||||| | Sbjct 2507940 TATGGCTCGAAACATTCATTGTTACCCAAAATTTGTGATGTAGAAGCAGTAGGCATTGGA 2507999 Query 47433 GCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAA 47492 || || || ||| ||||| | || | ||| | || | |||| Sbjct 2508000 GCCACCAACAAGGAGTTTCTCATACCGTGTTTGGCAAGCTTTTCTTTCAATTCATCCCAA 2508059 Query 47493 TCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATC 47552 ||||| | || | ||| ||||| || || ||||| | | |||| | Sbjct 2508060 TCCCACAATTCAGTTGGCTTTCTGTTCCACAAGTCGTATTGCAACAAACCTTGCGATGCT 2508119 Query 47553 GGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCC 47612 || || || | || |||| ||| ||||| | | || | |||| |||||| Sbjct 2508120 GGTGAGCCTTGGTAAGTTTCATAGGGACCTTCTTCCGCCGCTAATTCAATTGATGCTTCA 2508179 Query 47613 AATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGAT 47672 | ||| || ||| ||||||||||| |||| || || | | ||| |||||| || Sbjct 2508180 ACAGCAGCATGATAGATTGTTTCAAAAATTTGAATATTCAATTCCCTAGCTTCTTGGGAA 2508239 Query 47673 TCAAAAG-GATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAAT 47731 ||||| ||| |||| ||| ||||| ||||| ||||| | |||| Sbjct 2508240 TCAAATCCGAT-TCTCAAAACCATAAATGCATCAGCCAAGCCTTGGACACCCAAGGCAAT 2508298 Query 47732 TGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTAT 47791 |||||| || | | || || ||||||||| || | ||| || | |||| ||| || Sbjct 2508299 TGGTCTGTGTCTCATGTTTGATCTCTCAGCTTCAGGAACTGGGTAGTAGTTTCGATCAAT 2508358 Query 47792 AATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAAT---C 47848 | | |||| | | |||| || | | | || || | | Sbjct 2508359 GACTCTATTCAAATTACGTGTA---------ACAACTTTGGTGACGTCATGCAACTTGTC 2508409 Query 47849 AAACTTGTTAT-----TTATAACAAACCT-----ATTAA-----GT---GCTATAGATGC 47890 ||| |||| | | || | ||| || || || || || || || Sbjct 2508410 AAAGTTGTACCAAGCATGCTTACCATCCTGCTCAATAAAAGAAGGTAAAGCAATCGAAGC 2508469 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 | ||||| ||||| || |||| ||| | ||||| | |||||| ||| | || Sbjct 2508470 CAAGTTACAAACAGCAACTTCATCTGGTGCCGAATATTCAACAATTTCACAACACAAGTT 2508529 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010 | |||| ||| ||||||||||| || || ||||||| || |||||||| Sbjct 2508530 GGAAGATTTAATAACACCCAAATTTTTTTGGTTGGACTTGGTGTTACAAGCATCCTTGTA 2508589 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070 | ||| || || || ||||| || | || | || | ||| || | ||| | | Sbjct 2508590 CAACATGAATGGGGTACCAGTCTCAGTTTGTGCCTCCAAGATGGAATACCACAATTTTTG 2508649 Query 48071 AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 ||| || || |||| | | || | |||||||| ||| |||| |||| Sbjct 2508650 AGCTTTGATTGTCTTTCTACCACGACCTTCTTTCTCGTATTTCTCATACAACTCAACAAA 2508709 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 ||| || ||||| || | | || ||| |||||| ||| | | ||||| |||||| Sbjct 2508710 TTCGTCACCATAAGTATCAGCCAAGTTTGGAGCTTCATTTGGAGAGAACAATGTCCAATC 2508769 Query 48191 CTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATC 48250 ||| | | ||||| ||||||| | |||||| ||||| | |||| || || || Sbjct 2508770 ACCATTTTGCTCAACTCTTTTCATAAACAAATCTGGGATCCACAAAGCTGGGAACAAGTC 2508829 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 |||| ||| | |||||| || ||| ||| || ||| ||||| ||||| | ||||| Sbjct 2508830 TCTAGCTCTAATTTCTTCCTTACCATGGTTCTTTCTAATTTCAATGAAGTCAAAGATATC 2508889 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 ||| ||||||||||| | ||||| || | ||||||||| || ||||| |||||||| Sbjct 2508890 AGCGTGCCATGGTTCAAGATATAAAGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATC 2508949 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | ||| | ||||| ||||| |||| | | |||||| | |||||||||||| |||| Sbjct 2508950 CACATAACGAGCAGTGTTGTTGAAAACACGAACCATTGGAATAATACCATTTGAAGTACC 2509009 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATAC 48489 ||||| || | || || ||| | | | || || || || ||| || |||| Sbjct 2509010 GTTGGTACCAGCGATGTAGGCACCAGTGGAACGAATGTTGTGGATATGCAAT-CCAATAC 2509068 Query 48490 CACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATAC 48549 |||| || |||| || || | ||||| || | || |||||||| ||||| ||| Sbjct 2509069 CACCAGCACTTTTTGAAATCAAGGCACATGTCTTTAAAGTGTCATAAATACCTTCAATAG 2509128 Query 48550 TATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAAT 48609 ||| ||| |||| | | |||||| |||||||| || | ||| || | || Sbjct 2509129 AATCTTCTTTCATTGCAACCAAGAAACAAGATGACATTTGTGGTTTTGGAGTACCGGCAT 2509188 Query 48610 TAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAA 48669 | || || |||||| ||||| |||| || | | || | ||| || || || |||| Sbjct 2509189 TGAACAAACATGGAGAACCATGAGTAAAGTATCTTTGAGACATCAAATTGTAAGTCTCAA 2509248 Query 48670 TAACAGAATCT----ATATCCCATTGATGTATACCTATAGATACACGCATTAACATATAT 48725 |||| ||| ||||| | | ||| ||||| |||| || | ||| | || | | Sbjct 2509249 TAAC----TCTTGGGATATCTCTTCCATGGATACCAATAGCAACTCTCATAATCAAGTGT 2509304 Query 48726 TGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTA 48785 || ||||||||| ||| ||| ||| || || | ||||||| | ||||| ||||| Sbjct 2509305 TGTGGTCTTTCAGCAACTTTTCCATTAATACGTAACAAATATGATCTCTCCAAAGTTTTG 2509364 Query 48786 AAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 || ||||| || ||||| ||||| || |||| || ||||| ||| |||| Sbjct 2509365 AATCCAAAGTAATTGTAGTTGAAA--TCACGGTCATAAACAATTGCTGAGTTTA 2509416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108525971960