Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq39 266 5e-66 seq15 132 7e-26 seq6 118 2e-21 >seq39 Length=2831396 Score = 266 bits (294), Expect = 5e-66 Identities = 595/883 (67%), Gaps = 20/883 (2%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| || ||| |||| || |||||||| ||||| || |||| || || Sbjct 2634567 AGCCTTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGAT 2634508 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | |||||||||||||||||| ||| || ||| ||||| | || | Sbjct 2634507 ATTCTCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTTTGTTACCCAAAGCAAC 2634448 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 |||||||| || || |||||||| |||||||| ||||||| | |||||||| || | Sbjct 2634447 CAATAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAA 2634388 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 | || | || | |||||| ||| |||||||| || || ||||| | || | || Sbjct 2634387 CAAACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAAT 2634328 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGT-GATTATAATATAATAAAC 18158 | || || | | ||| || | | | || ||| || | | | || || | Sbjct 2634327 AA--TTCTTTCAACAATCTTTGGGTCAGGTCT--ATGTTGTAAATGAGCAAACAACAAGC 2634272 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | |||||||||||||||||||||||||| | | || ||||| || ||| || || | Sbjct 2634271 ATGCAAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATC 2634212 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAAT 18277 | ||||||| ||||| || || | ||| || || || || |||| | | | || || Sbjct 2634211 CTGGCATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGC-AAACGATCCACTGAAAAAG 2634153 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCA 18335 ||||||||||| ||| || || || | ||||| |||||||| | || || || Sbjct 2634152 ATACCCTCAACAGCA-GCAAAAGCAACCAATCTCTCAGCAAACAATGCATCGGAATCT-T 2634095 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 | |||||| | ||||| || | | || || || | || ||||||| Sbjct 2634094 GAATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCAT 2634035 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || || ||| ||| || | ||| || |||||||| || || || || ||||| Sbjct 2634034 TGAATAAGAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAG 2633975 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||| ||||| ||| ||||||| || || |||| |||||| ||| | || || ||| Sbjct 2633974 TTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAA 2633915 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 ||||| || | |||| |||| ||||| || |||||||| ||||| |||| | | Sbjct 2633914 TTTGAACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAG 2633855 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGT---TCC 18632 ||||||| ||||| | | ||||||| ||||||| || || | || | ||| Sbjct 2633854 CGAAAAAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTCC 2633795 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | |||| | |||||| || ||||| |||||| | ||||| || |||| ||| |||| Sbjct 2633794 AATCATGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCT 2633735 Query 18693 GTTTGTACATTTTATAAATATCTTCATGTTGT---ATAGGAAA 18732 |||||||||| |||| |||||| | | |||||||| Sbjct 2633734 TCTTGTACATTTGCCAAAT---TTCATGGTATCTAATAGGAAA 2633695 >seq15 Length=2091020 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || || || || || ||||| || ||| || Sbjct 2075013 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2074954 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 2074953 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2074894 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || | |||||| |||||||| || || || || Sbjct 2074893 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2074834 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || ||||| ||||| ||||| ||| Sbjct 2074833 ATTCAAAAAGAATCCACATTACACTTGGTGTTGAGATTGAGAGGTGGT 2074786 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || || || || || ||||| || ||| || Sbjct 2075241 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075182 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 2075181 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075122 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || | |||||| |||||||| || || || || Sbjct 2075121 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075062 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || ||||| ||||| ||||| ||| Sbjct 2075061 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075014 Score = 132 bits (146), Expect = 7e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || || || || || ||||| || ||| || Sbjct 2075469 ATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAATCATCA 2075410 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| |||||||| || || ||||| ||| Sbjct 2075409 GACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 2075350 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || | |||||| |||||||| || || || || Sbjct 2075349 CAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAAC 2075290 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || ||||| ||||| ||||| ||| Sbjct 2075289 ATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075242 Score = 129 bits (142), Expect = 9e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||||||||| || || || || || ||||| || || || Sbjct 2075698 AATGCAAATTTTCGTCAAAACATTGACCGGTAAGACCATCACCTTAGAGGTTGAGTCATC 2075639 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| || || ||| || || ||||| |||||||| || || ||||| || Sbjct 2075638 AGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 2075579 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| ||| ||||| || | |||||| |||||||| || || || || Sbjct 2075578 ACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACAA 2075519 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || | || || ||||| ||||| ||||| ||| Sbjct 2075518 CATTCAAAAAGAATCCACATTGCACTTGGTGTTGAGATTGAGAGGTGGT 2075470 >seq6 Length=960076 Score = 118 bits (130), Expect = 2e-21 Identities = 171/238 (72%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || || ||||| || || |||||||| || || Sbjct 21802 AATGCAAATCTTTGTCAAAACCCTTACGGGTAAAACCATCACTTTAGAAGTTGAGTCATC 21861 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || || || || ||||| || ||||| || || ||||| || Sbjct 21862 TGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 21921 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||| | ||| ||||| || | |||||| |||||||| || || || | Sbjct 21922 ACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCCGACTACA- 21980 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT-GTAAAA 156056 | ||||||| || | || | || || ||||| ||||| ||||| ||| |||||| Sbjct 21981 -ACATCCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGGTGGTAAAA 22037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871643212400