Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39 275 1e-68 seq15 147 4e-30 seq6 147 4e-30 >seq39 Length=2831396 Score = 275 bits (304), Expect = 1e-68 Identities = 561/831 (68%), Gaps = 24/831 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAATA 49650 |||||||||||||||||| || ||| ||| ||||| | || | | | || |||| Sbjct 2634501 CATAAAATCAAATGGATTGGTGACATTGTAAACTTTTT-TGTTACCCAAAGCAACCAATA 2634443 Query 49651 ATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATT 49710 |||| ||||| ||||||||||||||||| |||| || | ||||||||| ||||| || Sbjct 2634442 ATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAAAC 2634383 Query 49711 TAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 ||| ||| ||||||||| || ||||||||||| ||||| || |||| |||| || Sbjct 2634382 TAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAATTC 2634323 Query 49771 taattatattattttttgataa--tttatatttaatatgattcgcatatattaaACATGC 49828 | || | || ||| | | | | ||| || | |||| ||| | | || ||||| Sbjct 2634322 T--TTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGA---GCAAACAACAAGCATGC 2634268 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||||||||| |||||||| || || | | | || |||||||| ||| || |||||||| Sbjct 2634267 AAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCTGG 2634208 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTACTAGAAAAGAATAT 49945 ||||||||||||||| || | ||| || || || |||| | | ||| |||| || || Sbjct 2634207 CATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACT-GAAA--AAGAT 2634151 Query 49946 ACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAA 50002 |||||| ||| ||||| || | | ||| | ||||| ||| ||| |||| Sbjct 2634150 ACCCTCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAAC---AATGCATCGGAATCTTG 2634094 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 ||||| | || |||||||| || || ||||| || ||| || |||| ||||| || Sbjct 2634093 AATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCATT 2634034 Query 50063 AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 ||||| || ||| | || ||||| ||||| | Sbjct 2634033 GAATAAGAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAAGT 2633974 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 ||| ||||| | |||||| ||||| || ||||||| | | ||||| | | Sbjct 2633973 TTCTGAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGAAT 2633914 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 |||||||| | | | || ||| || || || ||| |||||||||||||| || || Sbjct 2633913 TTGAACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCAGC 2633854 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---CCA 50299 ||| || || || | | ||| ||| ||||||| || || || || || ||| Sbjct 2633853 GAAAAAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTCCA 2633794 Query 50300 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTT 50359 | | |||||| || |||||| | ||||||| ||||| ||||||||| | | || Sbjct 2633793 ATCATGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCCTT 2633734 Query 50360 TTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCG 50410 || |||||||| | || ||| | | ||| ||||| | ||||| || Sbjct 2633733 CTTGTACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACATAACG 2633683 >seq15 Length=2091020 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || ||||||||| | | || || || ||||| || | ||||| || || || || Sbjct 2074783 AAAACCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTC 2074842 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || |||| |||| |||||||||||||||||||| || ||||| |||||||| || Sbjct 2074843 GGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGG 2074902 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||| ||||| || || ||| ||||| |||| ||||| ||||| Sbjct 2074903 TGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTC 2074962 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || ||||| ||||| || |||||||| | || || ||||| Sbjct 2074963 AACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || || || | ||||| || || || || Sbjct 2075012 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075071 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||||||||||||||||||| || ||||| |||||||| ||| Sbjct 2075072 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075131 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| ||||| |||| ||||| ||||| Sbjct 2075132 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCA 2075191 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || ||||| ||||| || |||||||| | || || ||||| Sbjct 2075192 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || || || | ||||| || || || || Sbjct 2075240 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075299 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||||||||||||||||||| || ||||| |||||||| ||| Sbjct 2075300 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075359 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| ||||| |||| ||||| ||||| Sbjct 2075360 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCA 2075419 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| || ||||| ||||| || |||||||| | || || ||||| Sbjct 2075420 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || || || || || | ||||| || || || || Sbjct 2075468 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075527 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||||||||||||||||||| || ||||| |||||||| ||| Sbjct 2075528 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075587 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| ||||| |||| ||||| || || Sbjct 2075588 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGACTCA 2075647 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||| || ||||| ||||| || |||||||| | || || |||||| Sbjct 2075648 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 2075698 >seq6 Length=960076 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || ||||||| || || ||| || || || || Sbjct 22030 ACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 21971 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct 21970 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 21911 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| || ||||| || || || ||||| || | || || || || || Sbjct 21910 GATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAAC 21851 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||| ||||||||||| || | ||||| | ||| || |||||| Sbjct 21850 TTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATT 21802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479508067650