Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq39 271 1e-67 seq15 159 6e-34 seq6 134 2e-26 >seq39 Length=2831396 Score = 271 bits (300), Expect = 1e-67 Identities = 593/893 (66%), Gaps = 24/893 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| ||||||| || || || || || || | || || || Sbjct 2634563 TTTTGGTAATCAGAAACTCTTTTTTCAAAGAAATTGGTCTTACCAGCCAAGGAGATATTC 2634504 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAA 38950 | |||||||||||||||||| || ||| ||| ||||| | || | | | || || Sbjct 2634503 TCCATAAAATCAAATGGATTGGTGACATTGTAAACTTTTT-TGTTACCCAAAGCAACCAA 2634445 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 |||||| ||||| ||||||||||||||||| |||| || | ||||||||| ||||| || Sbjct 2634444 TAATCTGTCGGCAACAAATTCAACATATTGACACATCAACTTACAATTCATTCCCAACAA 2634385 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 ||| ||| ||||||||| || ||||||||||| ||||| || |||| |||| || Sbjct 2634384 ACTAACTGGCAATGCATCAGTAAAGAATTCTTTTTCAATTTCAACTGCTTCAGTAATAAT 2634325 Query 39071 cataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAACAT 39128 | || | || ||| | | | | ||| || | |||| ||| | | || ||| Sbjct 2634324 TCT--TTCAACAATCTTTGGGTCAGGTCTATGTTGTAAATGA---GCAAACAACAAGCAT 2634270 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| || ||||||||||| || | | | || |||||||| ||| || |||||| Sbjct 2634269 GCAAAATCAGTGTGTAAACCTTCATCACGACAAATCAATTCATTGGAAAAGGTCAATCCT 2634210 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA---CTACTAGAAAAGAAT 39245 ||||||||||||||||| || | ||| || || || ||||| | ||| |||||| Sbjct 2634209 GGCATTAATCCTCTCTTCTTCAACCAGAAAATGGAAGCAAACGATCCACTGAAAAAGA-- 2634152 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCT 39302 ||||||| ||| ||||| || | | ||| | |||||| || ||| |||| Sbjct 2634151 -TACCCTCAACAGCAGCAAAAGCAACCAATCTCTCAGCAAACA---ATGCATCGGAATCT 2634096 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 |||||| | ||||||||||| || || ||||| || ||| || |||| ||||| Sbjct 2634095 TGAATCCATCTGATGGCCCAATCAGCCTTCTTTTTAATTTGAGGGATGGTTTCAATAGCA 2634036 Query 39363 TTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 || ||||| || ||||| Sbjct 2634035 TTGAATAAGAAATCGGCTTCCTTTGGATCCTTGATATAAGTTTCAATCAATAATGAATAA 2633976 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 |||| ||||| | |||||| ||||| || ||||||| | ||||| | | Sbjct 2633975 GTTTCTGAATGAATGTTTTCCATCATGATTTGGAAACCATAAAATGATTTGGCTTCAGGA 2633916 Query 39483 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 |||||||| | | | || ||| || || || ||| |||||||||||||| || Sbjct 2633915 ATTTGAACTTCAGCAGAAAAGTTTTCCACCAAGTTTTCATTAACAATACCATCAGAGGCA 2633856 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTC---C 39599 ||||| || || || | | ||| ||| ||||||| || || || || || | Sbjct 2633855 GCGAAAAAGGCCAAGATTCTTCCAATGAAAAACCTTTCATTGTCATTCAATTTCTCTCTC 2633796 Query 39600 CAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 ||| | |||||| || |||||| | ||||||| ||||| || |||||| | | Sbjct 2633795 CAATCATGAAGATCTTTACCTAAATCAATTTCTTCTGCAGTCCAGAATGATGCTTCAGCC 2633736 Query 39660 TTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCG 39712 || || |||||||| | || ||| | | ||| ||||| | ||||| || Sbjct 2633735 TTCTTGTACATTTGCCAAATTTCATGGTATCTAATAGGAAACATGACATAACG 2633683 >seq15 Length=2091020 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || ||||| || | ||||| ||| || || || Sbjct 2074783 AAAACCACCTCTCAATCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTC 2074842 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || || Sbjct 2074843 GGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGG 2074902 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||| ||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 2074903 TGGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTC 2074962 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| ||||| || |||||||| | ||| || ||||| Sbjct 2074963 AACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || || | ||||| ||| || || || Sbjct 2075012 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075071 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 2075072 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075131 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 2075132 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCA 2075191 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| ||||| || |||||||| | ||| || ||||| Sbjct 2075192 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || || | ||||| ||| || || || Sbjct 2075240 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075299 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 2075300 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075359 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 2075360 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCA 2075419 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| ||||| || |||||||| | ||| || ||||| Sbjct 2075420 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || || | ||||| ||| || || || Sbjct 2075468 ATACCACCTCTCAATCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCG 2075527 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 2075528 GACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 2075587 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| ||||| ||||| || || Sbjct 2075588 GGAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGACTCA 2075647 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || ||||| ||||| || |||||||| | ||| || |||||| Sbjct 2075648 ACCTCTAAGGTGATGGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 2075698 >seq6 Length=960076 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || || || || ||||||| || || || || || || || Sbjct 22030 ACCACCTCTCAATCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 21971 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||||||||||||||||||| || ||||| ||||| || ||||| Sbjct 21970 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGG 21911 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || || ||||| || || || || || || || Sbjct 21910 GATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAAC 21851 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| ||| ||||||||||| || | ||||| | || || |||||| Sbjct 21850 TTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATT 21802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135558746200