Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39 262 3e-65 >seq39 Length=2831396 Score = 262 bits (290), Expect = 3e-65 Identities = 594/878 (68%), Gaps = 35/878 (4%) Strand=Plus/Plus Query 43702 TGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTC 43761 |||| ||||||| ||| ||| ||||| || |||||||||||||| || || | || || Sbjct 2633688 TGTCATGTTTCCTATTAGATACCATGAAATTTGGCAAATGTACAAGAAGGCTGAAGCATC 2633747 Query 43762 ATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCAC-ATTGGATTGC--AT 43817 ||| ||||| ||||||||| ||||||| |||||| ||| || |||||| | | Sbjct 2633748 ATTCTGGACTGCAGAAGAAATTGATTTAGGTAAAGATCTT--CATGATTGGAGAGAGAAA 2633805 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGG-----TTTTGGCGTTTTTTGCTGCGAG 43872 | || |||| ||| |||| | |||| | ||||| ||||| ||||| Sbjct 2633806 TTGAATGACAATGAAAGGTTTTT----CATTGGAAGAATCTTGGCCTTTTTCGCTGCCTC 2633861 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGA 43932 || || || || |||||||| ||||| ||| | ||||||||| | || || Sbjct 2633862 TGATGGTATTGTTAATGAAAACTTGGTGGAAAACTTTTCTGCTGAAGTTCAAATTCCTGA 2633921 Query 43933 AGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA--C 43990 ||| || |||||||| || ||||| || ||||| |||||||| |||| || | Sbjct 2633922 AGCCAAATCATTTTATGGTTTCCAAATCATGATGGAAAACATTCATTCAGAAACTTATTC 2633981 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATG 44048 | | || ||| || || || ||||| ||| || ||||| || || || |||| Sbjct 2633982 ATTATT--GATTGAAACTTATATCAAGGATC--CAAAGGAAGCCGATTTCTTATTCAATG 2634037 Query 44049 CGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AA 44105 | || ||||| | ||| |||||| | || || || |||||| | | |||||| | Sbjct 2634038 CTATTGAAACCATCCCTCAAATTAAAAAGAAGGCTGATTGGGCCATCAGATGGATTCAAG 2634097 Query 44106 ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 |||| ||| | |||| || || | || || ||||| | ||| || || || || Sbjct 2634098 ATTCCGATGCATTGTTTGCTGAGAGATTGGTTGCTTTTGCTGCTGTTGAGGGTATCTT-- 2634155 Query 44166 TTTCAG--GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 |||||| |||||||||| |||| || ||||| ||||| |||| || ||||| || || Sbjct 2634156 TTTCAGTGGATCGTTTGCTTCCATTTTCTGGTTGAAGAAGAGAGGATTAATGCCAGGATT 2634215 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| ||||| || || ||||||||||||| ||||| |||||||| ||||| Sbjct 2634216 GACCTTTTCCAATGAATTGATTTGTCGTGATGAAGGTTTACACACTGATTTTGCATGCTT 2634275 Query 44284 GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATT-ACAGATATTGTTG 44342 ||| ||| || | | | ||| ||| |||| || | ||| ||| || Sbjct 2634276 GTTGTTTGCTCATTT---ACAACATAGACCTGACCCAAAGATTGTTGAAAGA-ATTATTA 2634331 Query 44343 TAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAG 44402 || ||||| | || ||| ||||||| | || ||||| || || | ||| | | Sbjct 2634332 CTGAAGCAGTTGAAATTGAAAAAGAATTCTTTACTGATGCATTGCCAGTTAGTTTGTTGG 2634391 Query 44403 GAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGG 44462 |||||||| |||||| |||||| |||||| |||| || | ||| | | | Sbjct 2634392 GAATGAATTGTAAGTTGATGTGTCAATATGTTGAATTTGTTGCCGACAGATTATTGGTTG 2634451 Query 44463 AACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTT 44522 ||||| | | ||| || | ||| || || |||||||||||||| ||||| | Sbjct 2634452 CTTTGGGTAACAAAAAAGTTTACAATGTCACCAATCCATTTGATTTTATGGAGAATATCT 2634511 Query 44523 CGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560 | |||| || || || || || ||||||||| | ||| Sbjct 2634512 CCTTGGCTGGTAAGACCAATTTCTTTGAAAAAAGAGTT 2634549 Score = 156 bits (172), Expect = 3e-33 Identities = 303/445 (68%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| ||||| || ||||| || | |||||| || ||| || ||||||||| Sbjct 534512 CCAAAGATTGTTAATGGACCCGAAATGTTGAGTAAATACGTTGGTGCGTCTGAAGAAAAT 534453 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGG-GCGCAAAAGTTC 19547 | || |||||| |||||||||| ||| | |||| | ||| | | | | | Sbjct 534452 ATTCGTAATTTGTTCAAGGACGCTGAAGCTGAATATAAACTTAAAGGTGAGGACTCGGAC 534393 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG--- 19604 || |||| |||| || | |||||||| || | | | ||| || ||||||||||| Sbjct 534392 TT-GCACGTTATTATTTTTGATGAATTAGATTCCGTTTTTAAACAGAGAGGTTCTGGAAA 534334 Query 19605 ------TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 | || || || ||||| |||||| |||||| | ||||||| | || || Sbjct 534333 GAGTGACGGAACAGGGGTTGGTGACAATGTTGTGAATCAATTGTTGTCAAAGATGGATGG 534274 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| | || |||| |||||| | || ||||| ||||| |||||||| || || || || Sbjct 534273 TGTTGATCAGTTGAACAATATTCTTGTCATTGGTATGACCAATAGACTCGACTTGATTGA 534214 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 | || || || |||| ||| | || ||||| |||| || ||| ||||| ||||| Sbjct 534213 TACTGCATTGTTGAGACCTGGTAGATTTGAAATTCAGATTGAGATTGCTTTACCAGATGA 534154 Query 19779 ATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTT 19838 | || | ||| || || | ||||||||| || || || ||||| | | || Sbjct 534153 AAAAGGTAGAAAGGATATCTTTATGATACATACAAAAAAGTTGAGAGAAAATGGCTTGTT 534094 Query 19839 AAATGACGATGTAGATCTAGAAGAA 19863 || | | ||||| |||| || ||| Sbjct 534093 AACTAAGGATGTCAATCTTGATGAA 534069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455811084195