Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24]
39 sequences; 13,025,060 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq6 87.8 2e-12
seq39 84.2 3e-11
seq14 82.4 9e-11
>seq6
Length=960076
Score = 87.8 bits (96), Expect = 2e-12
Identities = 213/320 (67%), Gaps = 2/320 (1%)
Strand=Plus/Plus
Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668
||||||| || ||||| || ||| | ||| || | || | ||| || ||||||||
Sbjct 730965 TATCAAACCCGTCCATTTCAACCAATAATTGATTCAAGGTGTTTTCACGCTCATCATTGC 731024
Query 9669 CTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728
| ||||| |||| || | || || || | |||||||||||||||| || | ||
Sbjct 731025 CACCCATACGACCATTACCTCTTTCTTTACCAATAGCATCAATCTCATCAACAAAAATGA 731084
Query 9729 TGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
| ||| | || | || || || | ||| ||||||||| || || ||||
Sbjct 731085 TTGCTGGGGCCATATCCCTTGCCGTTTTGAATAAATCACGTACACGCGATGCACCAACAC 731144
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGG-AACATTGGATGAAGGGGACATTAGATTCA 9847
||||||||||||| ||||| | | ||| |||| | || || || ||| | ||||
Sbjct 731145 CAACAAACATCTCAACAAATTCCGATCCGGAAACACT-GAGAAAAGGTACACCTGCTTCA 731203
Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907
|| ||| | ||| || | | |||||||| ||||| || |||| | | |||
Sbjct 731204 CCAGCAGTTGCTTTTGCCAACAAGGTCTTACCTGTACCAGGAGGCCCCGACAAAATTGCA 731263
Query 9908 CCTCGTGGAATCTTGGCGCC 9927
|| || || |||||||| ||
Sbjct 731264 CCACGAGGGATCTTGGCACC 731283
>seq39
Length=2831396
Score = 84.2 bits (92), Expect = 3e-11
Identities = 219/327 (67%), Gaps = 13/327 (4%)
Strand=Plus/Plus
Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668
||||||| |||||||| || ||| ||||| || | || ||| | ||| ||||| |
Sbjct 2814214 TATCAAACCCATCCATTTCAACCAATAGTTGATTCAATGTAGTTTCTCTTTCGTCATTAG 2814273
Query 9669 CTG-----GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAA 9723
|| |||| | | | | | |||||| || | |||||| || || |||| ||
Sbjct 2814274 CTCCTGTTGCATTTCCCTTGGAT--CTTTGCTTACCAATGGCATCGATTTCGTCAACAAA 2814331
Query 9724 GACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGC 9782
|| || ||||| |||||| | || | ||| || | ||| || ||||| ||| |
Sbjct 2814332 CACAATAGATGGTGCATTTTCCCTTGCAGTCTTGAATAA-ATCACGCACACGTGAGGCAC 2814390
Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGAT-GAAGGGGACATT 9840
|||||||||||||||| || || || | | |||| ||| | || || || ||
Sbjct 2814391 CCACACCAACAAACATTTCAACGAATTCGGAACCGGATACA--GAATAAAACGGAACGCC 2814448
Query 9841 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9900
|| ||| || || ||||| |||||| | |||||||| || || ||| || | ||
Sbjct 2814449 AGCTTCCCCAGCTGTGGCTTTGGCGAGCAATGTCTTACCTGTTCCCGGCGGCCCTGAAAG 2814508
Query 9901 GAGGGCACCTCGTGGAATCTTGGCGCC 9927
| ||||| || || |||||||| ||
Sbjct 2814509 AATAGCACCACGGGGGATCTTGGCACC 2814535
>seq14
Length=365783
Score = 82.4 bits (90), Expect = 9e-11
Identities = 173/257 (67%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCG 154165
||||| ||||| || || || || || || ||||| ||||||||||| | ||||||
Sbjct 51547 TATGGTCGTGTGGCACCTCGTTCGGGGCTTGCTGTCAAACATGGTATTTCAACTGGTGCA 51488
Query 154166 GGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGAC 154225
||||| |||| | || || |||||||| ||||| || | ||||| || ||
Sbjct 51487 GGTGTCATTGACGCTGATTATCGAGGTGAAGTTAAAGTTGTCTTGTTCAACCATTCTGAA 51428
Query 154226 AAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAG 154285
|| ||||||| || || | ||| || | || || ||| | ||| | || || ||
Sbjct 51427 AAGAACTTTGATGTTAAAAAGGGCGATAGAATTGCTCAATTGGTTTTAGAAAGAATTGTT 51368
Query 154286 ACACCCGATGTGGAGGAAATT-----GGCTTCCTTGAAGAG-ACGGAGAGGGGTGCAGGC 154339
| | ||| | || |||||| || | |||| ||| || ||| | |||| |||
Sbjct 51367 AATGCTGATATTGAAGAAATTACTGAGGAAGCATTGACGAGCACTGAGCGAGGTGAAGGT 51308
Query 154340 GGATTTGGTTCTACCGG 154356
|||||||| || || ||
Sbjct 51307 GGATTTGGATCCACAGG 51291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260515660360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |