Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24]
39 sequences; 13,025,060 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq15 165 2e-35
seq6 152 1e-31
seq13 100 7e-16
>seq15
Length=2091020
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| ||
Sbjct 2074798 TCTCAACACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 2074857
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | || || ||||| || || | || |||||| || || ||||||||||| ||
Sbjct 2074858 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2074917
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || || |||||||| | ||| || ||||| |||||
Sbjct 2074918 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGAT 2074977
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| ||||| | ||| | ||||||
Sbjct 2074978 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075013
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| ||
Sbjct 2075026 TCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 2075085
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | || || ||||| || || | || |||||| || || ||||||||||| ||
Sbjct 2075086 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2075145
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || || |||||||| | ||| || ||||| |||||
Sbjct 2075146 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGAT 2075205
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| ||||| | ||| | ||||||
Sbjct 2075206 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075241
Score = 165 bits (182), Expect = 2e-35
Identities = 166/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| ||
Sbjct 2075254 TCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 2075313
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | || || ||||| || || | || |||||| || || ||||||||||| ||
Sbjct 2075314 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2075373
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || || |||||||| | ||| || ||||| |||||
Sbjct 2075374 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGAT 2075433
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || ||||| ||||| | ||| | ||||||
Sbjct 2075434 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCAT 2075469
Score = 161 bits (178), Expect = 2e-34
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||||||||||| | ||||| |||| ||||||||| ||
Sbjct 2075482 TCTCAACACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACC 2075541
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | || || ||||| || || | || |||||| || || ||||||||||| ||
Sbjct 2075542 ATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTT 2075601
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| || ||| || || |||||||| | || || ||||| |||||
Sbjct 2075602 GTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGAT 2075661
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || ||||| ||||| | ||| | |||||||
Sbjct 2075662 GGTCTTACCGGTCAATGTTTTGACGAAAATTTGCATT 2075698
>seq6
Length=960076
Score = 152 bits (168), Expect = 1e-31
Identities = 164/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | ||| ||||| ||||||| ||||| |||| ||||||||| ||
Sbjct 22018 TCTCAACACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 21959
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | || || ||||| ||||| | || |||||| || || || || ||||||||
Sbjct 21958 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTT 21899
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| ||| || |||||||| || | || || ||||| |||||
Sbjct 21898 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGACTCAACTTCTAAAGTGAT 21839
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| | ||||| | || | |||||||
Sbjct 21838 GGTTTTACCCGTAAGGGTTTTGACAAAGATTTGCATT 21802
>seq13
Length=1114083
Score = 100 bits (110), Expect = 7e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||||||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 402350 GAAAATTTGACCATCAGTAATGGAAATAACATTGGTTGGGATATAAGCAGAGACATCACC 402409
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| ||||| | | || || || || | ||| ||||||||
Sbjct 402410 ACCTTGGGTTTCAATGATTGGCAAAGCAGTCAATGAACCACCACC 402454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530604107066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |