Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20parapsilosis_20[genbank_20GCA_5F000982675.1_202014-10-24] 39 sequences; 13,025,060 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq15 147 5e-30 seq6 123 5e-23 >seq15 Length=2091020 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2074805 ACCAAGTGTAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2074864 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2074865 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2074924 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 2074925 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 2074984 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 2074985 CCGGTCAATGTTTTGACGAAAATTTGCAT 2075013 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075033 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075092 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075093 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075152 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 2075153 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 2075212 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 2075213 CCGGTCAATGTTTTGACGAAAATTTGCAT 2075241 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075261 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075320 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075321 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075380 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | ||| || || | ||||| |||||| Sbjct 2075381 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGATTCAACCTCTAAGGTGATGGTCTTA 2075440 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || ||||| || ||||| Sbjct 2075441 CCGGTCAATGTTTTGACGAAAATTTGCAT 2075469 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || || ||| ||||||||| ||||||||||| | | || | ||||| || Sbjct 2075489 ACCAAGTGCAATGTGGATTCTTTTTGAATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 2075548 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| | |||||| || |||||||| || ||||||||| Sbjct 2075549 AATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 2075608 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | ||| || | || |||||||| || | || || || | ||||| |||||| Sbjct 2075609 ATCTTGGATTTGACATTGTCAATAGTGTCTGATGACTCAACCTCTAAGGTGATGGTCTTA 2075668 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || ||||| || || ||||| || |||||| Sbjct 2075669 CCGGTCAATGTTTTGACGAAAATTTGCATT 2075698 >seq6 Length=960076 Score = 123 bits (136), Expect = 5e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||| | | || | ||||| || | |||||| || ||||| Sbjct 21994 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAA 21935 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||| || || || || ||||||||||||||||| | || || | Sbjct 21934 GATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATT 21875 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || ||||| | |||||| || |||||||| | || || || Sbjct 21874 GTCAATGGTGTCAGATGACTCAACTTCTAAAGTGATGGTTTTACCCGTAAGGGTTTTGAC 21815 Query 283088 GAATATCTGCATT 283100 || || |||||| Sbjct 21814 AAAGATTTGCATT 21802 Score = 93.3 bits (102), Expect = 9e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| ||||| | ||||| || |||| || ||||||| || || || ||||||||| Sbjct 406594 GGGAAACCTTCAACTTGACCATTGGCAATGGCTCTCATCAAGGTGGATTTACCAGCACCA 406653 Query 317089 TTGGGGCCGCAAAGACCATA---CCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTC 317145 || || || || | |||||| | |||| |||| | |||| |||| |||||| Sbjct 406654 TTTGGACCACACAAACCATATCTTCTGTTTC---TCTTTAATCTAAATTGGGTCTTGTTC 406710 Query 317146 AGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | | ||||| ||||||| |||| ||||||||||| | ||||| ||| || || Sbjct 406711 AACAAGATCTTGGCACCATAAGCCAACGAGAACTCACAGTTACACAAGTCTTCACC 406766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738676957506