Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq103 212 6e-50 >seq103 Length=904190 Score = 212 bits (234), Expect = 6e-50 Identities = 488/728 (67%), Gaps = 18/728 (2%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || || || ||||| ||||||||||| ||||| || || || || |||| ||||| ||| Sbjct 561371 TTCTGGTAATCACTGACTCTCTTTTCGAAGAAGTTGGTCTTACCGGCTAAAGAAATGTTT 561430 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||| ||||| || || || | ||| || | | || | | | |||| Sbjct 561431 TCCATGAAATCGAATGGGTTAGTGACGTTGTAGACCTTTTTGTTACCTAGCGCAACCAAT 561490 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 |||||||| || |||||||| | ||| || |||||| | ||||||||| |||| ||| Sbjct 561491 AATCTATCAGCAACAAATTCAACATATTGACACATTAAGTTACAGTTCATACCTAATAAG 561550 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtt-tttttCTATATTAACCGCTTCAATGATTAT 16182 | || | || || | ||| |||| ||||| || | ||| |||||| | || || Sbjct 561551 GAGATTGGTAAAGCGTC-GACAAAGAATTCCTTTTCGATCTCAACAGCTTCAGTAATAAT 561609 Query 16183 ATCTCTTACTACACTA--TTTAAC-GGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 |||| | ||| || | | || |||| ||| || |||| || ||| || Sbjct 561610 ---TCTTTCAACAATAACAGCATCTGGTCTGTTTTGTAAATGAGAGAACAATAAACACGC 561666 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||||||| || || |||||||| | || ||| || ||||| || || || | ||| || Sbjct 561667 AAAATCAGTGTGTAAACCTTCGTCACGACATATCAATTCGTTAGAGAAGGTTAAACCAGG 561726 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| | |||| || || | ||| || || | |||||| |||||| ||||| ||||| Sbjct 561727 CATCAAACCTCTCTTCTTCAACCAGAAAATGGAGGCAAACGAACCACTGAAGAAGATACC 561786 Query 16360 TTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA-----CGTTCTAtttttactttct 16414 ||| || || || || ||||| |||| ||||| | ||| | | | || Sbjct 561787 TTCGACAGCAGCGAAAGCAACTAATCTTTCACCAAATAAAGCGTCGTCGT----CGTT-G 561841 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||| || |||||| | || || | || | ||| ||||| || || |||||| Sbjct 561842 ATCCATCTTAAAGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGTTATCGATAGCATTA 561901 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 ||||| ||| ||| || |||| || ||||| || || ||||| || | Sbjct 561902 AATAAGAAATCGGCTTCCTTTGGATCTTTGATGTAAGTGTCGATAAGTAACGAGTAAGTC 561961 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || ||||| || ||||| || || |||||||| || || | ||||| | || Sbjct 561962 TCAGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTCTGGGGTT 562021 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || ||||||| | || |||| | ||||||||||| || || || || ||| ||| Sbjct 562022 TGGACTTCAGCAGAGAAATTTTCAACCAAGTTTTCGTTGACAATACCGTCAGAAGCAGCA 562081 Query 16655 AAAAACGC 16662 |||||||| Sbjct 562082 AAAAACGC 562089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510884189800