Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq103 183 3e-41 seq138 98.7 9e-16 seq141 87.8 2e-12 seq101 84.2 2e-11 >seq103 Length=904190 Score = 183 bits (202), Expect = 3e-41 Identities = 388/577 (67%), Gaps = 4/577 (1%) Strand=Plus/Plus Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 || ||||||||| |||||| | | ||| | ||||| || | ||||||||||| || Sbjct 449087 TCTTCTTTGCCGTGATTCTTTCTGATATCTATGAAGTCGAATATATCCGCATGCCAAGGT 449146 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || | ||||| ||||| || || |||||||| || || || ||||| || ||||| || Sbjct 449147 TCCAAGTAAAGAGCAAAGGCACCAGGTCTCTTGTTACCACCTTGATCCACATAACGAGCG 449206 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 |||||||| | || | | ||| || | || ||| || || | ||| || || Sbjct 449207 GTGTTGTTAAAAACACGAACCATTGGAATGATACCATTAGAAGTACCGTTGGTACCGGCG 449266 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | ||| | | |||| |||||||| ||| ||||| ||||| || | || Sbjct 449267 ATGTAAGTACCAGTGGAACGAATGTTGTGAATGTGTAAACCAATGCCACCTGCACTCTTG 449326 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || |||| || || |||| ||||||||||| || || ||| ||| || || | Sbjct 449327 GAAATCAAAGCACACGTCTTCAAGGTGTCGTAGATACCGTCAATGGAGTCATCCTTCATA 449386 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGG 23764 || || |||||||| ||||||||||| | | || ||| | || || | || || Sbjct 449387 GCAACTAAGAAACAAGAAGACATTTGTGGGCTAGGGGTACCAGCATTAAATAAGGTTGGC 449446 Query 23765 CTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATG 23824 |||| || ||||||| | ||||| | ||||||| |||| | | || || Sbjct 449447 GAACCGTGGGTGAAGTATCTTTGGGACATCATGTTGTACGATTCGACGACTCTCTCGATA 449506 Query 23825 TCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG--ACCG 23882 || || ||||||||||| | || || | ||| |||| | ||| ||||| ||| | | Sbjct 449507 TCGTCACCGTGTATACCAACAGCAACTCTCATAATCAAATGTTGTGGTCTTTCGGCAACC 449566 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | | ||||| ||| | |||| || || | || || || || ||||| || |||| | Sbjct 449567 TTA--CCGTTGATTCTCAACAAGTAAGATCTTTCCAAAGTCTTGAATCCGAAGTAGTTGT 449624 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||||| ||||| || || || ||||| ||||| Sbjct 449625 AATTAAAATCACGGTCAAATACAATTGCCGAGTTCAA 449661 Score = 141 bits (156), Expect = 8e-29 Identities = 518/802 (65%), Gaps = 17/802 (2%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || |||||| | ||| || || | ||| | || || |||| || || | || | Sbjct 562281 GAAGAACCATTGTTGATGGAAAACACGCGTCGTTTCGTTTTGTTCCCAATCAAGTACCAC 562222 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | |||||||| || || ||||| || || ||||||| ||||||| | ||| Sbjct 562221 GAAATTTGGCAAATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAATCGAC 562162 Query 57627 CTGTCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 || ||||||| || ||| || | || | ||| ||| | || ||| Sbjct 562161 TTGGGTAAGGATACACAAGACTGGAACGAAAAATTGAACAACAATGAAAGATACTTCATT 562102 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 | ||||||||||| || || || || |||||||| ||||| || ||||| ||| Sbjct 562101 TCCAGAATCTTGGCGTTTTTTGCTGCTTCTGACGGTATTGTCAACGAAAACTTGGTTGAA 562042 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || || ||||| ||| | || || | || || || || || ||| | Sbjct 562041 AATTTCTCTGCTGAAGTCCAAACCCCAGAAGCCAAGTGTTTCTATGGTTTCCAAATCATG 561982 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CA 57861 || |||||| | || || || | || ||| |||| ||||| || ||| | || || || Sbjct 561981 ATGGAAAACATTCACTCTGAGACTTACTCGTTACTTATCGACACTTACATCAAAGATCCA 561922 Query 57862 ACGACGAGAAACGTAGACTG-TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAG 57920 | | || | || || || || || ||||| | || || ||| |||||| Sbjct 561921 AAG--GA-AGCCGATTTCTTATTTAATGCTATCGATAACATTCCTTGTATCAAGAAGAAG 561865 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATC 57980 || || ||| | | | |||||| || || | || || | || || || | Sbjct 561864 GCCGACTGGGCTTTAAGATGGATCAACGACGACGACGCTTTATTTGGTGAAAGATTAGTT 561805 Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || ||||| || ||||||||||| ||||| || ||||| | || || ||| || Sbjct 561804 GCTTTCGCTGCTGTCGAAGGTATCTTCTTCAGTGGTTCGTTTGCCTCCATTTTCTGGTTG 561745 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| | || ||||||| || | || || ||||| ||||||| || ||||| Sbjct 561744 AAGAAGAGAGGTTTGATGCCTGGTTTAACCTTCTCTAACGAATTGATATGTCGTGACGAA 561685 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG- 58159 ||| | || |||||||||||||| || ||| |||| |||| || |||| ||| | Sbjct 561684 GGTTTACACACTGATTTTGCGTGTTTATTGT--TCTCTCATTTACA--AAACAGACCAGA 561629 Query 58160 GGATCGCATCTTGGA---CATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | | || | || ||||| || || || || | ||||||||| || || | Sbjct 561628 TGCTGTTATTGTTGAAAGAATTATTACTGAAGCTGTTGAGATCGAAAAGGAATTCTTTGT 561569 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || |||| | || | | ||||||||| | | || |||| | || |||| Sbjct 561568 CGACGCTTTACCAATCTCCTTATTAGGTATGAACTGTAACTTAATGTGTCAATATGTTGA 561509 Query 58277 GTTTGTTGCCGACAGACTTTTG 58298 |||||||| || ||| | ||| Sbjct 561508 ATTTGTTGCTGATAGATTATTG 561487 >seq138 Length=177124 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 |||||| | ||| |||||||||| | || || | || ||||| | || || ||||| Sbjct 79688 CATAAATAAATCTGGTATCCATAATCCATAAAATAAATCACGGGCTCTCATTTCTTCTTT 79747 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||| ||| || ||||| ||||| | || | || ||||| || || || || Sbjct 79748 CCCGTGGTTTTTCTTCAAGTCCAATACACTGAAAATATCACAGTGCCATGGTTCAAGATA 79807 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||| || || ||||| || || || |||||||||||||| | || || ||||| Sbjct 79808 TATCGCAAAAGCTCCTGGTCTTTTGTTACCACCCTGATCGACGTATCTCGCTGTATTGTT 79867 Query 23533 GTACACTCTTAGCATCGGCACGAGACC 23559 | | ||||||||||| || || | ||| Sbjct 79868 GAAGACTCTTAGCATAGGAACTAAACC 79894 >seq141 Length=295507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| ||||||| || || || ||| | || ||||| | || Sbjct 197331 ATGCAAATTTTCGTCAAGACTTTGACAGGTAAGACCATTACCTTAGAAGTTGAGTCATCA 197272 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | ||||| || || Sbjct 197271 GACACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCGCCAGATCAA 197212 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | |||| || || || || || || ||||| | || || | | ||||| || Sbjct 197211 CAGAGATTAATTTTTGCCGGTAAGCAATTAGAAGA-TGGCAGAACATTATCTGATTACAA 197153 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| || | || |||| | ||| ||||||| |||| Sbjct 197152 TATCCAAAAGGAATCCACATTACACTTGGTCTTAAGATTGAGGGGTGGTA 197103 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| ||||||| || || || ||| | || ||||| | || Sbjct 197103 ATGCAAATTTTCGTCAAGACTTTGACAGGTAAGACCATTACCTTAGAAGTTGAGTCATCA 197044 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || ||||| Sbjct 197043 GACACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 196984 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | |||| || || || || || || ||||| | || || | | ||||| || Sbjct 196983 CAGAGATTAATTTTTGCCGGTAAGCAATTAGAAGA-TGGCAGAACATTATCTGATTACAA 196925 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| ||||| || | || |||| | ||| |||| || ||| Sbjct 196924 TATCCAAAAGGAATCCACATTACACTTGGTCTTAAGATTGAGAGGTGGT 196876 >seq101 Length=125820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 105476 AAAATGCAAATTTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCT 105417 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | ||||| | || ||||| ||||| | || || || Sbjct 105416 TCGGACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAAGAAGGTATTCCACCTGAT 105357 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | |||| |||||||| || || || ||||| || || | ||||| Sbjct 105356 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACCTTATCTGATTAC 105297 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||| ||||| ||| | || |||| | ||| | || || ||| Sbjct 105296 AACATTCAAAAGGAATCCACTTTACACTTGGTCTTAAGATTAAGAGGTGGT 105246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765324588560