Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq103 219 1e-51 seq101 156 1e-32 seq141 141 2e-28 seq105 87.8 4e-12 >seq103 Length=904190 Score = 219 bits (242), Expect = 1e-51 Identities = 574/862 (67%), Gaps = 23/862 (3%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| | |||| || || || ||||| | |||||| | || || | | || Sbjct 562209 ATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAATCGACTTGGGTAAGGAT 562150 Query 268802 TTAATAGATTGGAA----AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 | ||| ||||| ||||| || | || | |||||| || || || | | ||| Sbjct 562149 ACACAAGACTGGAACGAAAAATTGAACAACA-ATGAAAGATACTTCATTTCC-AGAATCT 562092 Query 268858 TG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTC 268916 || |||||||||| | | ||| ||||| || |||||||| | || || || |||| | Sbjct 562091 TGGCGTTTTTTGCTGCTTCTGACGGTATTGTCAACGAAAACTTGGTTGAAAATTTCTCTG 562032 Query 268917 AAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATA 268976 || || || | || ||||||| ||||| || || ||||| || || ||||| | Sbjct 562031 CTGAAGTCCAAACCCCAGAAGCCAAGTGTTTCTATGGTTTCCAAATCATGATGGAAAACA 561972 Query 268977 TTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGA 269036 |||| || |||| ||| || | || || ||||| || | ||| || ||| Sbjct 561971 TTCACTCTGAGACTTACTCGTTACTTATCGACACTTACATCAAAGATCCAAAGGAAGCCG 561912 Query 269037 AAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCT 269095 | ||||| | |||| || ||| || ||| | | || || | || |||||| Sbjct 561911 ATTTCTTATTTAATGCTATCGATAAC-ATTCCTTGTATCAAGAAGAAGGCCGACTGGGCT 561853 Query 269096 CTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 | | |||||| ||||| || ||| ||| || ||||| ||||||||||| || ||| Sbjct 561852 TTAAGATGGATCAACGACGACGACGCTTTATTTGGTGAAAGATTAGTTGCTTTCGCTGCT 561793 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || |||||||| ||||| || || |||||| | || || ||||||||||| ||||| Sbjct 561792 GTCGAAGGTATCTTCTTCAGTGGTTCGTTTGCCTCCATTTTCTGGTTGAAGAAGAGAGGT 561733 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 | ||||| || ||||| |||||||||||||||||| | | ||||||||||||||| Sbjct 561732 TTGATGCCTGGTTTAACCTTCTCTAACGAATTGATATGTCGTGACGAAGGTTTACACACT 561673 Query 269273 GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTA 269332 || || || |||||||| || || ||| | | ||| ||| | | || || Sbjct 561672 GATTTTGCGTGTTTATTGTTCTCTCATT---TACAAAACAGACCAGATGCTGTTATTGTT 561616 Query 269333 TACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCT 269392 | |||||| | ||||||| | |||| ||||| | || ||| || | Sbjct 561615 GAAAGAATTATTACTGAAGCTGTTGAGATCGAAAAGGAATTCTTTGTCGACGCTTTACCA 561556 Query 269393 ATCGATCTTA-TCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGA 269451 ||| |||| | |||||||| | || | ||| ||||| || | || || |||| Sbjct 561555 ATC-TCCTTATTAGGTATGAACTGTAACTTAATGTGTCAATATGTTGAATTTGTTGCTGA 561497 Query 269452 TAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAG 269508 |||||| |||| | |||| || ||||| || ||||| || || || Sbjct 561496 TAGATTATTGGTTGCGCTAGG---TAACAAAAAGGTCTACAACGTCACTAACCCATTCGA 561440 Query 269509 TTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAA 269568 ||| ||||| || || || |||| |||||| | || |||||||| ||| | || ||| | Sbjct 561439 TTTCATGGAAAACATTTCTTTAGCCGGTAAGACCAACTTCTTCGAAAAGAGAGTCAGTGA 561380 Query 269569 CTATCAGAAAATGGGTGTAATG 269590 || ||||| ||||| ||| Sbjct 561379 TTACCAGAAGGCTGGTGTCATG 561358 >seq101 Length=125820 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||||| || ||||| || ||||| || || |||||| Sbjct 105247 CCACCTCTTAATCTTAAGACCAAGTGTAAAGTGGATTCCTTTTGAATGTTGTAATCAGAT 105306 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||||| ||| || ||||| || |||| || ||||||||||| || Sbjct 105307 AAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGGA 105366 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || ||||| | || ||||| || | ||| || || ||| || Sbjct 105367 ATACCTTCTTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCCGAAGATTCAACT 105426 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| ||||| ||||||||||| | || || || || || ||||||||| Sbjct 105427 TCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTTG 105477 >seq141 Length=295507 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||| ||||| || || ||||| || ||||||| ||||| || ||||||| ||| Sbjct 197357 TGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGCCATCTTCTAATTGC 197416 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct 197417 TTACCGGCAAAAATTAATCTCTGTTGATCTGGCGGAATACCTTCCTTGTCTTGAATCTTG 197476 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | ||| || | || || |||| ||||| |||||||| || Sbjct 197477 GACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGTCTTACCTGTT 197536 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 | |||||| || || || ||||| || Sbjct 197537 AATGTTTTAACGAAGATTTGCATATT 197562 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||||||| ||||| || || ||||| || ||||||| ||||| || ||||||| ||| Sbjct 197129 TGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGCCATCTTCTAATTGC 197188 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct 197189 TTACCGGCAAAAATTAATCTCTGTTGATCTGGCGGAATACCTTCCTTGTCTTGAATCTTG 197248 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | ||| || | || || |||| ||||| |||||||| || Sbjct 197249 GACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGTCTTACCTGTC 197308 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 197309 AAAGTCTTGACGAAAATTTGCAT 197331 >seq105 Length=815575 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 105446 AATTTCTGGACCATGGAAATAAAGAACTATCTCTATGTAAGAAACAT-ACGGCGTAACCC 105504 ||| ||| || |||| || | |||| ||||||||||| ||| || || |||||||| Sbjct 357082 AATGTCTAGAATATGGCAAAAGAGAAAATTCTCTATGTAA-AAAGATAACTGCGTAACC- 357139 Query 105505 GATGCTATA--AATTTTTCTACAGATATAGCCCCTCTCATCCCAGTACTGAAATTTTCTA 105562 || || || || | |||| | || | || ||||| | |||| ||||||||| || | Sbjct 357140 -ATTCTCTAAGAAGTATTCTGCTGAAGTTGCACCTCTTGTACCAGCACTGAAATTATCGA 357198 Query 105563 AAAATCTTACTGGATTTTTCTCTAAAGATACCCTTGTGCCTCCTGATGCAACCAATACAA 105622 |||||| || | ||| |||||||| | ||| | || ||||| || | |||||| ||| Sbjct 357199 TAAATCTAACGGTATTGTTCTCTAACGGTACAGTGGTACCTCCAGAAGTCACCAATGCAA 357258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395552807644