Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq138 190 1e-43 seq103 167 1e-36 >seq138 Length=177124 Score = 190 bits (210), Expect = 1e-43 Identities = 333/480 (69%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 25887 TATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTG 25946 ||| |||| | |||| |||||| || ||| | ||| |||||||||||||||||| Sbjct 79642 TATCTGGAGAAAATAGCGACCAATCTAAATCTTGTTTTACTCTCTCCATAAATAAATCTG 79701 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 | ||||| | | ||||||||||||| | ||||||||||||||||| ||||| || || | Sbjct 79702 GTATCCATAATCCATAAAATAAATCACGGGCTCTCATTTCTTCTTTCCCGTGGTTTTTCT 79761 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 | | || || | | |||||||| ||||||||||||| | ||| || |||||| | Sbjct 79762 TCAAGTCCAATACACTGAAAATATCACAGTGCCATGGTTCAAGATATATCGCAAAAGCTC 79821 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 || |||||| ||||| ||||| |||||||| || || | ||||| ||| | | || Sbjct 79822 CTGGTCTTTTGTTACCACCCTGATCGACGTATCTCGCTGTATTGTTGAAGACTCTTAGCA 79881 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | |||||||| ||| |||| || |||| ||| || | || || | | || Sbjct 79882 TAGGAACTAAACCACTTGATGTACCATTTGAACTAGATATGTATGAGCCACTTCCACGAA 79941 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTGAA 26245 | ||| |||| | || ||||| || | ||||||||| || | | || | Sbjct 79942 CGTTATGAACATGTAGTCCAATTCCCCCGGATGCTTTTGAAATTAAGGCTGATTTATGTA 80001 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||| | |||| || | ||| |||| ||| ||| | | |||||| ||||||||| Sbjct 80002 A-TGTTTTATAAATACCATCTATTGAATCATCTTCCATGGCAAGTAAAAAGCAAGAAGAT 80060 Query 26306 AA----TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATA 26361 || ||| | | | ||||| |||||||||||||| || | |||||| | |||| Sbjct 80061 AAATAGTTG-TACTCA---GTTCCAGAATTAAATAATGTAGGAGACGCATGAATGAAATA 80116 Score = 102 bits (112), Expect = 4e-17 Identities = 329/487 (68%), Gaps = 28/487 (6%) Strand=Plus/Plus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| ||||| ||||| | |||||| | ||||||||| ||||||||||| Sbjct 78444 GTAAATTGAATAGCTCTAGTTGCTGCCTGAGTTCTTAAATAATACATACCAGTTTTCAAG 78503 Query 24725 T-TCTTCTTCCAACCGTAAAAATGCATTGATG-TTAGTTTTGCAATGTTTGCTGATTCTA 24782 |||| | ||| | || ||||| | || || ||| || ||| ||| ||| || Sbjct 78504 CCTCTT-TCCCATGCATAGAAATG-ACTGCTGGTTAACTTGCCAAACGTTG--GATCCTG 78559 Query 24783 AAAACAAGT--TCATCGATTG-AGCTTGGCAAACAAAACGTTG-TCTATCTGCA-GCTAA 24837 ||| || | |||| ||| |||| | ||| |||| | || ||| ||| || || Sbjct 78560 CAAATAAATATTCATACTTTGCAGCTGGTCAAT--AAACTTCCCTCGATC-GCATGCCAA 78616 Query 24838 GTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGT 24897 ||||| || ||| ||||| || || |||| || ||| | ||||| || | Sbjct 78617 ATCAATAATAACTTTTTGTGATATTTCCCAAACTGTCTTATATAGTTTTTTTAGTTCTTT 78676 Query 24898 TGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCTCATATT 24957 |||||| | | |||||||||| |||||| || | || ||| ||| | | ||| Sbjct 78677 CGGAATATTAGGTATATTTTGAATTGATCCGTTGT-TCATGATA-ATTTTGTTTTTCATT 78734 Query 24958 CGGTG---TCCAAAGATT---AATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGAT 25011 | || |||||| || || | |||| |||||| | || | || || | | Sbjct 78735 -GATGCATTCCAAA--TTCCCAAATCAATCAA-ATCTCTCAATAAATACTTGTTAACTAC 78790 Query 25012 AATAAATTCTCCAGACAAAACTCTTCTTATTG-ATAAGTTTGAAGTGAATGGTTCAAAAC 25070 | |||| || || ||||||| ||| |||| |||| || || || ||||||| || | Sbjct 78791 TTGATATTCACCTGATAAAACTCGTCT-ATTGTATAAATTGGACGTATATGGTTCGAAGC 78849 Query 25071 ATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCG 25130 |||||||| |||||| ||||| || ||||||||||| |||||| ||||| || | | Sbjct 78850 ATTCATTAAATCCTAAAATTTGGGATGTAGATGCTGTAGGCATTGGTGCTACTAGCAATG 78909 Query 25131 AATTTCT 25137 ||||||| Sbjct 78910 AATTTCT 78916 >seq103 Length=904190 Score = 167 bits (184), Expect = 1e-36 Identities = 326/479 (68%), Gaps = 2/479 (0%) Strand=Plus/Plus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| ||||||| ||| ||| | ||||| |||||| ||| ||| |||||||| ||| Sbjct 448991 TTTGGAGAGAATAATGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAATAAATCAGGA 449050 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | || ||||||||||| ||||| |||||||||| |||||||||||| | Sbjct 449051 ATCCATAAGGCCGGGAATAAATCTCTAGCTCTATTTTCTTCTTTGCCGTGATTCTTTCTG 449110 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | ||||| ||| || || ||||| | ||||| ||||| || || | |||||| ||| Sbjct 449111 ATATCTATGAAGTCGAATATATCCGCATGCCAAGGTTCCAAGTAAAGAGCAAAGGCACCA 449170 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 ||| || ||||||||||| || || | || || | || ||||| | |||| Sbjct 449171 GGTCTCTTGTTACCACCTTGATCCACATAACGAGCGGTGTTGTTAAAAACACGAACCATT 449230 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188 |||| | ||| | ||| ||||| || | || | | || || || | ||| Sbjct 449231 GGAATGATACCATTAGAAGTACCGTTGGTACCGGCGATGTAAGTACCAGTGGAACGAATG 449290 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTGAAAC 26247 | |||| || | ||| || ||||| || | || ||||| ||||| ||| || Sbjct 449291 TTGTGAATGTGTAAACCAATGCCACCTGCACTCTTGGAAATCAAAGCACACGTCTTCAA- 449349 Query 26248 TGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAA 26307 || ||| | || || | ||| ||| | ||||| | | ||| ||||||||||| | Sbjct 449350 GGTGTCGTAGATACCGTCAATGGAGTCATCCTTCATAGCAACTAAGAAACAAGAAGACAT 449409 Query 26308 TTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366 ||| | || || || | ||||||||| || || | | | || || | |||| || Sbjct 449410 TTGTGGGCTAGGGGTACCAGCATTAAATAAGGTTGGCGAACCGTGGGTGAAGTATCTTT 449468 Score = 109 bits (120), Expect = 3e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||||| |||| |||||||||||| | | ||||||||| ||||||| |||||||| Sbjct 448141 AAATTCACCAGCCAAAACTCTTCTAGAGTAAATATTTGAAGTGTATGGTTCGAAACATTC 448200 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||| || ||||| ||||||||||| || || |||||||| || | ||||| || || Sbjct 448201 ATTGTTCCCTAAAATTTGAGAAGTGGAAGCAGTTGGCATCGGAGCAACTAATAAGGAGTT 448260 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||| | ||| | ||| | | | ||| || || ||||||| || Sbjct 448261 TCTGATACCGTGTTTGGCCAAGTTTTGCTTCAAAGTATCCCAGTC 448305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039404802475