Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq103 235 8e-57 seq141 141 1e-28 seq101 134 2e-26 >seq103 Length=904190 Score = 235 bits (260), Expect = 8e-57 Identities = 569/857 (66%), Gaps = 24/857 (3%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| || | ||| || | |||| | || |||||||| || ||||| || | || || || Sbjct 561367 AGCCTTCTGGTAATCACTGACTCTCTTTTCGAAGAAGTTGGTCTTACCGGCTAAAGAAAT 561426 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGT 17978 | ||| ||||| ||||| |||||| || || | ||||| || | | | Sbjct 561427 GTTTTCCATGAAATCGAATGGGTTAGTGACGTTGTAGACCTTTTTGTTACCT-AGCGCAA 561485 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 ||||||||||| || |||||||| |||||||| |||| || | || |||||||||| Sbjct 561486 CCAATAATCTATCAGCAACAAATTCAACATATTGACACATTAAGTTACAGTTCATACCTA 561545 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 || || |||| ||| || | || ||||| || || |||||||||| || | | Sbjct 561546 ATAAGGAGATTGGTAAAGCGTCGACAAAGAATTCCTTTTCGATCTCAACAGCTTCAGTAA 561605 Query 18099 TTATGTTTATTACCCTAG----ATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 | || || || || || | | | ||| ||| | | || | ||| Sbjct 561606 TAATTCTTTCAACAATAACAGCATCTGGTCTGTTTTGTAAATGAGAGA-------ACAAT 561658 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||||||||||||||||| || | |||| ||||||||| || ||| Sbjct 561659 AAACACGCAAAATCAGTGTGTAAACCTTCGTCACGACATATCAATTCGTTAGAGAAGGTT 561718 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | |||||| || || | ||| || || || || || || | ||| Sbjct 561719 AAACCAGGCATCAAACCTCTCTTCTTCAACCAGAAAATGGAGGCAAACGAACCACTGAAG 561778 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCA---AAACTGTATTTATT 18330 || ||||| || || ||| ||||| || | |||||||||| || ||| || | | Sbjct 561779 AAGATACCTTCGACAGCA-GCGAAAGCAACTAATCTTTCACCAAATAAAGCGTCGTCGTC 561837 Query 18331 GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 | | |||||| || ||||| || | | ||||| || || | || || Sbjct 561838 GTT---GATCCATCTTAAAGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGTTATCGAT 561894 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||||||||| || ||| ||| || | |||||| || ||||||||||| | || || Sbjct 561895 AGCATTAAATAAGAAATCGGCTTCCTTTGGATCTTTGATGTAAGTGTCGATAAGTAACGA 561954 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 || | ||||| || ||| ||||||| || || |||| ||| || | | || || Sbjct 561955 GTAAGTCTCAGAGTGAATGTTTTCCATCATGATTTGGAAACCATAGAAACACTTGGCTTC 562014 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 || ||| | || | | || |||| ||||| || || || || |||||||||| Sbjct 562015 TGGGGTTTGGACTTCAGCAGAGAAATTTTCAACCAAGTTTTCGTTGACAATACCGTCAGA 562074 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATT--- 18627 || || ||||| ||||| | |||||| | | ||||||| | || | || Sbjct 562075 AGCAGCAAAAAACGCCAAGATTCTGGAAATGAAGTATCTTTCATTGTTGTTCAATTTTTC 562134 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 |||||| || | | |||| || | || | |||||| | ||||| || || | ||| Sbjct 562135 GTTCCAGTCTTGTGTATCCTTACCCAAGTCGATTTCTTCGGCGGTCCAGAAGGACGCTTC 562194 Query 18688 GGCCTGTTTGTACATTT 18704 ||| | |||||||||| Sbjct 562195 GGCTTTCTTGTACATTT 562211 >seq141 Length=295507 Score = 141 bits (156), Expect = 1e-28 Identities = 176/238 (74%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 155816 TAATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||||| |||||||| || |||||||||| || || || || ||||| |||||||| | Sbjct 197567 TAATAAATATGCAAATCTTCGTTAAAACATTAACAGGTAAGACCATTACCTTAGAAGTTG 197508 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 | || || | ||| ||||| || || || ||||| || ||||| || || | Sbjct 197507 AGTCATCAGACACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCGC 197448 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAG 155994 |||| ||||| ||||| |||| |||||||||||| | |||||| |||||| ||||| | Sbjct 197447 CAGATCAACAGAGATTAATTTTTGCCGGTAAGCAATTAGAAGATGGCAGAACATTATCTG 197388 Query 155995 ATTATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 |||| | ||||||||| || | || | || || || |||||||| || || ||| Sbjct 197387 ATTACA--ATATCCAAAAGGAATCCACATTACACTTGGTCTTAAGATTGAGGGGTGGT 197332 Score = 131 bits (144), Expect = 2e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || || ||||| |||||||| || || Sbjct 197103 ATGCAAATTTTCGTCAAGACTTTGACAGGTAAGACCATTACCTTAGAAGTTGAGTCATCA 197044 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 197043 GACACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 196984 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| |||| |||||||||||| | |||||| |||||| ||||| ||||| | Sbjct 196983 CAGAGATTAATTTTTGCCGGTAAGCAATTAGAAGATGGCAGAACATTATCTGATTACA-- 196926 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || | || || || |||||||| ||||| ||| Sbjct 196925 ATATCCAAAAGGAATCCACATTACACTTGGTCTTAAGATTGAGAGGTGGT 196876 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || || ||||| |||||||| || || Sbjct 197331 ATGCAAATTTTCGTCAAGACTTTGACAGGTAAGACCATTACCTTAGAAGTTGAGTCATCA 197272 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || ||||| || ||||| || || ||||| ||| Sbjct 197271 GACACCATTGACAACGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCGCCAGATCAA 197212 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| |||| |||||||||||| | |||||| |||||| ||||| ||||| | Sbjct 197211 CAGAGATTAATTTTTGCCGGTAAGCAATTAGAAGATGGCAGAACATTATCTGATTACA-- 197154 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || | || || || |||||||| || || ||| Sbjct 197153 ATATCCAAAAGGAATCCACATTACACTTGGTCTTAAGATTGAGGGGTGGT 197104 >seq101 Length=125820 Score = 134 bits (148), Expect = 2e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || || ||||| || || ||||| |||||||| ||| | Sbjct 105476 AAAATGCAAATTTTCGTCAAGACTTTAACTGGTAAGACCATTACCTTAGAAGTTGAATCT 105417 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| |||||||| || || || || Sbjct 105416 TCGGACACCATTGACAATGTCAAGTCTAAGATCCAAGACAAAGAAGGTATTCCACCTGAT 105357 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | || |||||||| | |||||| ||||| ||||| ||||| Sbjct 105356 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACCTTATCTGATTAC 105297 Query 156000 AATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || |||| | | || | || || || |||||||||||||| |||| Sbjct 105296 AACAT-TCAAAAGGAATCCACTTTACACTTGGTCTTAAGATTAAGAGGTGGTG 105245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870234358800