Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20]
193 sequences; 11,241,723 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq103 188 1e-42
seq101 172 1e-37
seq141 165 2e-35
>seq103
Length=904190
Score = 188 bits (208), Expect = 1e-42
Identities = 298/425 (70%), Gaps = 9/425 (2%)
Strand=Plus/Plus
Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706
||||||||||| || ||||||||||||||||| ||||||| | ||| |||||||| |||
Sbjct 561488 AATAATCTATCAGCAACAAATTCAACATATTGACACATTAAGTTACAGTTCATACCTAAT 561547
Query 49707 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766
|| | |||||| || || ||| ||||| ||||| || || ||||||| ||||
Sbjct 561548 AAGGAGATTGGTAAAGCGTCGACAAAGAATTCCTTTTCGATCTCAACAGCTTCAGTAATA 561607
Query 49767 atcat---aattatattattttttgataatttatatttaatatgattcgcatatattaaA 49823
|| | || ||| | | || | || | | | |||| | | | ||||
Sbjct 561608 ATTCTTTCAACAATAACAGCATCTGGTCTGTTTTGT---AAATGA---GAGAACAATAAA 561661
Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883
|| ||||||||||| |||||||| ||||| | | |||| ||||| ||| || |||||
Sbjct 561662 CACGCAAAATCAGTGTGTAAACCTTCGTCACGACATATCAATTCGTTAGAGAAGGTTAAA 561721
Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943
|| ||||| || |||||||| || | ||| || || || ||||| || | |||||
Sbjct 561722 CCAGGCATCAAACCTCTCTTCTTCAACCAGAAAATGGAGGCAAACGAACCACTGAAGAAG 561781
Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003
||||| |||||| || || || | || |||| | ||||| | | || ||
Sbjct 561782 ATACCTTCGACAGCAGCGAAAGCAACTAATCTTTCACCAAATAAAGCGTCGTCGTCGTTG 561841
Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063
||||| ||| |||||| || || || || |||||| |||| || || || ||||| |||
Sbjct 561842 ATCCATCTTAAAGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGTTATCGATAGCATTA 561901
Query 50064 AATAA 50068
|||||
Sbjct 561902 AATAA 561906
>seq101
Length=125820
Score = 172 bits (190), Expect = 1e-37
Identities = 179/232 (77%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
||||||||| | | ||| || || |||||||| | || ||| || || || |||||||
Sbjct 105246 ACCACCTCTTAATCTTAAGACCAAGTGTAAAGTGGATTCCTTTTGA-ATGTTGTAATCAG 105304
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
|||| |||| |||| || ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 105305 ATAAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTG 105364
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| || |||||||| ||||| || ||| || ||||| || | || || ||||| |
Sbjct 105365 GAATACCTTCTTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCCGAAGATTCAA 105424
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||||| |||||||| ||||||||||| || || | || || ||||||||
Sbjct 105425 CTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105476
>seq141
Length=295507
Score = 165 bits (182), Expect = 2e-35
Identities = 180/238 (76%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || | | ||| || || ||||| || | || || |||||| ||||||
Sbjct 197330 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197389
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||||||||| |||| || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 197390 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197449
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || || || || || || | ||||| || ||
Sbjct 197450 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197509
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTA 192543
||||||| |||||||| ||||| ||||||||||||| || || ||||| |||||||
Sbjct 197510 ACTTCTAAGGTAATGGTCTTACCTGTTAATGTTTTAACGAAGATTTGCATATTTATTA 197567
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
||||||||| | | ||| || || ||||| || | || || |||||| ||||||||
Sbjct 196876 ACCACCTCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGA 196935
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|||||||| |||| || ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 196936 TAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGGTCTGGTGG 196995
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||| || ||||| || || || || || || | ||||| || || ||
Sbjct 196996 AATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAAC 197055
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| |||||||| ||||| || || || || | || || |||||
Sbjct 197056 TTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197103
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || | | ||| || || ||||| || | || || |||||| ||||||
Sbjct 197102 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197161
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|||||||||| |||| || ||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 197162 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197221
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || || || || || || | ||||| || ||
Sbjct 197222 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197281
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| |||||||| ||||| || || || || | || || |||||
Sbjct 197282 ACTTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984477565565550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |