Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq103 188 1e-42 seq101 172 1e-37 seq141 165 2e-35 >seq103 Length=904190 Score = 188 bits (208), Expect = 1e-42 Identities = 298/425 (70%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 ||||||||||| || ||||||||||||||||| ||||||| | ||| |||||||| ||| Sbjct 561488 AATAATCTATCAGCAACAAATTCAACATATTGACACATTAAGTTACAGTTCATACCTAAT 561547 Query 49707 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 49766 || | |||||| || || ||| ||||| ||||| || || ||||||| |||| Sbjct 561548 AAGGAGATTGGTAAAGCGTCGACAAAGAATTCCTTTTCGATCTCAACAGCTTCAGTAATA 561607 Query 49767 atcat---aattatattattttttgataatttatatttaatatgattcgcatatattaaA 49823 || | || ||| | | || | || | | | |||| | | | |||| Sbjct 561608 ATTCTTTCAACAATAACAGCATCTGGTCTGTTTTGT---AAATGA---GAGAACAATAAA 561661 Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||||||||| |||||||| ||||| | | |||| ||||| ||| || ||||| Sbjct 561662 CACGCAAAATCAGTGTGTAAACCTTCGTCACGACATATCAATTCGTTAGAGAAGGTTAAA 561721 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| || |||||||| || | ||| || || || ||||| || | ||||| Sbjct 561722 CCAGGCATCAAACCTCTCTTCTTCAACCAGAAAATGGAGGCAAACGAACCACTGAAGAAG 561781 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 ||||| |||||| || || || | || |||| | ||||| | | || || Sbjct 561782 ATACCTTCGACAGCAGCGAAAGCAACTAATCTTTCACCAAATAAAGCGTCGTCGTCGTTG 561841 Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||||| ||| |||||| || || || || |||||| |||| || || || ||||| ||| Sbjct 561842 ATCCATCTTAAAGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGTTATCGATAGCATTA 561901 Query 50064 AATAA 50068 ||||| Sbjct 561902 AATAA 561906 >seq101 Length=125820 Score = 172 bits (190), Expect = 1e-37 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| | | ||| || || |||||||| | || ||| || || || ||||||| Sbjct 105246 ACCACCTCTTAATCTTAAGACCAAGTGTAAAGTGGATTCCTTTTGA-ATGTTGTAATCAG 105304 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| |||| |||| || ||||| |||||||| ||||||||||| ||||||||||||| Sbjct 105305 ATAAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTG 105364 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||| ||||| || ||| || ||||| || | || || ||||| | Sbjct 105365 GAATACCTTCTTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCCGAAGATTCAA 105424 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||| |||||||| ||||||||||| || || | || || |||||||| Sbjct 105425 CTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105476 >seq141 Length=295507 Score = 165 bits (182), Expect = 2e-35 Identities = 180/238 (76%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | | ||| || || ||||| || | || || |||||| |||||| Sbjct 197330 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197389 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || ||||| ||||| ||||| ||||||||||||||||| || Sbjct 197390 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197449 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||||| || || Sbjct 197450 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197509 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTA 192543 ||||||| |||||||| ||||| ||||||||||||| || || ||||| ||||||| Sbjct 197510 ACTTCTAAGGTAATGGTCTTACCTGTTAATGTTTTAACGAAGATTTGCATATTTATTA 197567 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| || || ||||| || | || || |||||| |||||||| Sbjct 196876 ACCACCTCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGA 196935 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| |||| || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 196936 TAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGGTCTGGTGG 196995 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || || || || || | ||||| || || || Sbjct 196996 AATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAAC 197055 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| ||||| || || || || | || || ||||| Sbjct 197056 TTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197103 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | | ||| || || ||||| || | || || |||||| |||||| Sbjct 197102 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197161 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| |||| || ||||| ||||| ||||| ||||||||||||||||| || Sbjct 197162 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197221 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||||| || || Sbjct 197222 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197281 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| |||||||| ||||| || || || || | || || ||||| Sbjct 197282 ACTTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984477565565550