Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq103 194 3e-44 seq101 165 1e-35 seq141 158 2e-33 >seq103 Length=904190 Score = 194 bits (214), Expect = 3e-44 Identities = 373/545 (68%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 || ||||| ||| ||| | |||||||| ||||| || || || |||| || || Sbjct 561371 TTCTGGTAATCACTGACTCTCTTTTCGAAGAAGTTGGTCTTACCGGCTAAAGAAATGTTT 561430 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATA-ATATTTTTCT--CCTATCAATACATAT 38948 | ||| ||||| ||||| || || || || | ||||| | |||| | || Sbjct 561431 TCCATGAAATCGAATGGGTTAGTGACGTTGTAGACCTTTTTGTTACCTAGCGCAACC--- 561487 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||||||| || ||||||||||||||||| ||||||| | ||| |||||||| ||| Sbjct 561488 AATAATCTATCAGCAACAAATTCAACATATTGACACATTAAGTTACAGTTCATACCTAAT 561547 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | |||||| || || ||| ||||| ||||| || || ||||||| |||| Sbjct 561548 AAGGAGATTGGTAAAGCGTCGACAAAGAATTCCTTTTCGATCTCAACAGCTTCAGTAATA 561607 Query 39069 atcat---aattatattattttttgataatttatatttaatatgattcgcatataGTAAA 39125 || | || ||| | | || | || | | | |||| | | | |||| Sbjct 561608 ATTCTTTCAACAATAACAGCATCTGGTCTGTTTTGT---AAATGA---GAGAACAATAAA 561661 Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || |||||||| || |||||||||||||| | | |||| ||||| ||| || ||||| Sbjct 561662 CACGCAAAATCAGTGTGTAAACCTTCGTCACGACATATCAATTCGTTAGAGAAGGTTAAA 561721 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || ||||| || |||||||| || | ||| || || || ||||| || | ||||| Sbjct 561722 CCAGGCATCAAACCTCTCTTCTTCAACCAGAAAATGGAGGCAAACGAACCACTGAAGAAG 561781 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAA 39305 ||||| || ||| || || || | || |||| | ||||| | | || || Sbjct 561782 ATACCTTCGACAGCAGCGAAAGCAACTAATCTTTCACCAAATAAAGCGTCGTCGTCGTTG 561841 Query 39306 ATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 39365 ||||| ||| ||||| || || || || |||||| |||| || || || ||||| ||| Sbjct 561842 ATCCATCTTAAAGCCCAGTCGGCCTTCTTCTTGATACAAGGAATGTTATCGATAGCATTA 561901 Query 39366 AATAA 39370 ||||| Sbjct 561902 AATAA 561906 >seq101 Length=125820 Score = 165 bits (182), Expect = 1e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| || || |||||||| | || || ||| || Sbjct 105238 TTCTTACCACCACCTCTTAATCTTAAGACCAAGTGTAAAGTGGATTCCTTTTGAATGTTG 105297 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 ||||| ||||| | || | || || ||||| |||||||| || |||||||| ||||| Sbjct 105298 TAATCAGATAAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGA 105357 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || |||||||| ||||| || ||| || ||||| || || || || Sbjct 105358 TCAGGTGGAATACCTTCTTTGTCTTGGATCTTAGACTTGACATTGTCAATGGTGTCCGAA 105417 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||| |||||||| ||||||||||| || || | ||| || |||||||| Sbjct 105418 GATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105476 >seq141 Length=295507 Score = 158 bits (174), Expect = 2e-33 Identities = 179/239 (75%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | || ||| || || ||||| || | || || ||||| ||||| Sbjct 197330 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197389 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||| ||||| |||||||||||||||||||| || || Sbjct 197390 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197449 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || ||||| || || Sbjct 197450 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197509 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTAT 172077 ||||||| |||||||| ||||| ||||||||||||| ||| || ||||| |||||||| Sbjct 197510 ACTTCTAAGGTAATGGTCTTACCTGTTAATGTTTTAACGAAGATTTGCATATTTATTAT 197568 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || ||| || || ||||| || | || || ||||| ||||| || Sbjct 196876 ACCACCTCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGA 196935 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || || ||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 196936 TAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGGTCTGGTGG 196995 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || || || || || ||||| || || || Sbjct 196996 AATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAAC 197055 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| ||||| || || || || | ||| || ||||| Sbjct 197056 TTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197103 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | || ||| || || ||||| || | || || ||||| ||||| Sbjct 197102 ATACCACCCCTCAATCTTAAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCA 197161 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||| ||||| |||||||||||||||||||| || || Sbjct 197162 GATAATGTTCTGCCATCTTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGC 197221 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || || || || ||||| || || Sbjct 197222 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCA 197281 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| ||||| || || || || | ||| || ||||| Sbjct 197282 ACTTCTAAGGTAATGGTCTTACCTGTCAAAGTCTTGACGAAAATTTGCAT 197331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133816359400