Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq138 183 9e-41 seq103 123 7e-23 seq102 123 7e-23 seq105 96.9 1e-14 >seq138 Length=177124 Score = 183 bits (202), Expect = 9e-41 Identities = 514/782 (66%), Gaps = 19/782 (2%) Strand=Plus/Plus Query 155600 ATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAG 155658 |||||| || ||||| || | || | || ||||| ||||||||||| || ||||||| Sbjct 79370 ATTACAAACAGCAGTTTCTTCTGGTGACGAA-TATTCAACAATCTCACAACAAAGGTTAG 79428 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 | ||| || || |||||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 79429 ATGACTTAATAGTTCCTAAATTCTGTTGGTTTGATTTCAGATTACATGCATCTTTGTACA 79488 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 ||||| || ||| || || | || || || ||| |||| | | | | Sbjct 79489 ACATGTACGGACCTCCAGTTTCGGTTTGACATTCTAGTATCGAACGCCATAATTTTTGAG 79548 Query 155779 CATTAA-----TTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCG 155833 | || | ||| || |||| | | ||| ||||| || ||| || || Sbjct 79549 CTTTGACAGTCTTTACTGCTTGTCCC-GTGTTC----TCATACTTTTCATAGAGTTCTCT 79603 Query 155834 GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 | |||| || || |||||||| || | ||||||| | ||||| || |||| |||||||| Sbjct 79604 GAAATCGTCTCCATAACAATCGCTTAATCCAGGGGAGTTATCTGGAGAAAATAGCGACCA 79663 Query 155894 AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAG 155953 | | || |||| | ||||||||||| ||| ||| | |||| || | Sbjct 79664 ATCTAAATCTTGTTTTACTCTCTCCATAAATAAATCTGGTATCCATAATCCATAAAATAA 79723 Query 155954 GTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAAT 156013 || | || | || || | ||||| || ||| | || || | ||| Sbjct 79724 ATCACGGGCTCTCATTTCTTCTTTCCCGTGGTTTTTCTTCAAGTCCAATACACTGAAAAT 79783 Query 156014 ATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTG 156070 |||| || ||| || ||||| || |||||| || || ||| |||||||| Sbjct 79784 ATCACAGTGCCATGGTTCAAGATATATCGCAAAAGCTCCTGGTCTTTTGTTACCACCCTG 79843 Query 156071 ATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGT 156130 ||| || || | || || || |||||||| | ||||||||||| | |||| | || || Sbjct 79844 ATCGACGTATCTCGCTGTATTGTTGAAGACTCTTAGCATAGGAACTAAACCACTTGATGT 79903 Query 156131 GCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAAT 156190 ||||| | | || | || ||| | ||||| ||||||| |||||||||||| Sbjct 79904 ACCATTTGAACTAGATATGTATGAGCCACTTCCACGAACGTTATGAACATGTAGTCCAAT 79963 Query 156191 ACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAAT 156250 || || || ||| |||||| || ||| | || || || ||||||| || || Sbjct 79964 TCCCCCGGATGCTTTTGAAATTAAGGCTGATTTATGTAATGTTTTATAAATACCATCTAT 80023 Query 156251 AGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT--GTTCCA 156308 |||||||||||||| | |||| | |||| ||| ||| | || || | |||||| Sbjct 80024 TGAATCATCTTCCATGGCAAGTAAAAAGCAAGAAGATAAAT--AGTTGTACTCAGTTCCA 80081 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| |||||| | |||||||| |||||||| | ||||| | || ||||| Sbjct 80082 GAATTAAATAATGTAGGAGACGCATGAATGAAATACTTCTGCGACATCAATTCATATGTT 80141 Query 156369 TC 156370 || Sbjct 80142 TC 80143 >seq103 Length=904190 Score = 123 bits (136), Expect = 7e-23 Identities = 239/352 (68%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 155970 TCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || || | |||||||||||| | | |||| ||| || ||||| | ||| || Sbjct 449087 TCTTCTTTGCCGTGATTCTTTCTGATATCTATGAAGTCGAATATATCCGCATGCCAAGGT 449146 Query 156030 TCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCA 156086 |||| || | |||||| |||| |||||| ||||| ||||| ||||| ||||| Sbjct 449147 TCCAAGTAAAGAGCAAAGGCACCAGGTCTCTTGTTACCACCTTGATCCACATAACGAGCG 449206 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || || || |||| | ||| ||||| |||||||| ||||| || ||||| ||| Sbjct 449207 GTGTTGTTAAAAACACGAACCATTGGAATGATACCATTAGAAGTACCGTTGGTACCGGCG 449266 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 || | | ||||| || |||| || ||||| |||| ||||| ||||||| | || Sbjct 449267 ATGTAAGTACCAGTGGAACGAATGTTGTGAATGTGTAAACCAATGCCACCTGCACTCTTG 449326 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 ||||| ||| || ||| | || | | | ||||| ||||| || ||||| | ||| Sbjct 449327 GAAATCAAAGCACACGTCTTCAAGGTGTCGTAGATACCGTCAATGGAGTCATCCTTCATA 449386 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | | || | || ||| | ||| || | || || ||||| || |||| Sbjct 449387 GCAACTAAGAAACAAGAAGACATTTGTGGGCTAGGGGTACCAGCATTAAATA 449438 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||||||||| |||| |||||| |||||| | ||||| ||||| || || Sbjct 448747 GTATTCAACAATCTCACAACACAAGTTAGATGATTTGATGATACCTAAGTTCTTTTGATT 448806 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || |||||||||||||||| |||| || |||| || || || || | ||||| Sbjct 448807 GGTCTTCTTGTTACAAGCATCCTTATATAACATAAATGGAGTACCGGTTTCAGTTTGTGC 448866 Query 155750 GTCCA 155754 |||| Sbjct 448867 ATCCA 448871 Score = 89.7 bits (98), Expect = 2e-12 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| ||||||||||||||||| | |||||||||||| | ||| | ||||||||| | Sbjct 299114 AGCACCATGAGCAATCATACAATCTCTTTCCATTTCACCGAAACGTAAACCACCATCTCT 299173 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 ||| ||||||| || | ||| | ||||| || ||||| ||| | | | Sbjct 299174 TGATCTACCCTCAACGGGTTGTCTTGTTAAGACTTGAACCGGACCTCTAGCCCTAGCGTG 299233 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451 ||| || || | |||||| || | | ||| |||||| ||||||| || | | Sbjct 299234 AATCTTGTCATCAACCATGTGTCTTAATCTTTGATAATACGTTGGACCAAAGAAAATCTG 299293 Query 233452 TGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTACCCGATGAATTG-T 233510 ||| ||||| || || | | ||| |||| | ||||||| |||| | |||| | Sbjct 299294 TGCCATTAATTTTTTACCTGTGTGGCCGTTGTACATAACTTCA-AACCCTCTTGATTGAT 299352 Query 233511 AACCAATATCTTTTAATA 233528 ||||| ||| | |||| Sbjct 299353 AACCATGCTCTCTCAATA 299370 >seq102 Length=776775 Score = 123 bits (136), Expect = 7e-23 Identities = 345/522 (66%), Gaps = 17/522 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | | || || ||||| ||||| || ||||| || | Sbjct 654755 CTATCAAATCTACCTGGTCTCATCAAAGCCTTATCTAAAATATCAGCCCTGTTAGTACCA 654696 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 ||||| ||||||| || | | ||||||||||| ||| | |||||| Sbjct 654695 GCCAAAACAACAACGTGGTCAGAACTTTCGAATCCATCCATTTCGACTAACAATTGATTC 654636 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC---CGAATCGCTCCttttt 289026 | || ||| | ||||||||| | || |||| || ||| ||| | || | Sbjct 654635 AACGTAGTTTCACGTTCATCATTAGCTCCACTTGCATTACCTTTTGAA------CGTTGT 654582 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| |||||||| || || | ||| | | | |||||||| | | ||| | Sbjct 654581 TTACCAATTGCATCAATCTCATCGACGAATACAATTGATGGAGAATTCTCACGGGCAGTC 654522 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| || || | ||||| ||||| |||| ||||||| ||||||| || ||||||||| Sbjct 654521 TTAAACAAATCACGAACACGAGATGCACCAACACCAACAAACATTTCAACGAATTCAGAA 654462 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || || | ||||| ||| | ||||| ||||| |||| | || | ||| || Sbjct 654461 CCTGAAAC-AGAGTAGAATGGAACACTGGCTTCACCTGCAGTTGCCTTGGCTATAAGCGT 654403 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 |||||| || || ||||| || ||| | | || | || | ||| || || || Sbjct 654402 CTTACCAGTACCTGGTGGACCTGATAAAATCGCACCTCTAGGAATTTTAGCTCC--CAAT 654345 Query 289266 CTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || || || |||||| | | |||||| | || | |||| || ||| | ||| ||| Sbjct 654344 TTTTCGTACTTTTCAGGGTTTTGTAAAAACTTCACGAATTCCATAACTTCTTCTTTCGCC 654285 Query 289324 TCATCACAT-CCTGCTACATCAGCAAAAGTAATATTAATATC 289364 || |||| || || ||||| ||| |||| || ||||| Sbjct 654284 TC-GGACATCCCAGCAACATCCTTAAATCTAATTTTTATATC 654244 >seq105 Length=815575 Score = 96.9 bits (106), Expect = 1e-14 Identities = 116/157 (74%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| || || || ||| || | |||||| ||| Sbjct 70851 AGAATTTCCTTAAGACGAGGAACACCCAAAGTAACATT---CTTTGAAGAAACACCTGCA 70795 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||||| || | ||| || | ||| ||||||||| || || ||||| Sbjct 70794 TAATGGAAAGTATTCAACGTCATTTGCGTCGCTGGTTCACCAATAGACTGGGCTGCAATG 70735 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | |||||||||||| || || ||||| ||||||| Sbjct 70734 ACACCAACCATTTCACCAGGGTGAACAATCGACTTCT 70698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813960471041