Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq103 104 2e-17 seq141 100 2e-16 >seq103 Length=904190 Score = 104 bits (114), Expect = 2e-17 Identities = 370/574 (64%), Gaps = 21/574 (4%) Strand=Plus/Plus Query 130538 ATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATG 130597 || || | |||||| ||||||||||| || || | || || |||||||| |||| || Sbjct 447914 ATATTTAACGATTGTGATTGATCAATGAATGCCGCTCTATCAGCAGCCATATCGATAATA 447973 Query 130598 GTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGC 130657 || | || |||||| ||||||| |||| | | | | | ||| ||| Sbjct 447974 TGCTTTTGAGAAATTTCCCAAACGGTCTTATATAAGGCTTTCAATTCATCGGGAATGTTA 448033 Query 130658 GCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTAC 130717 | | | ||||| ||||||||||| ||||| | ||| |||| | ||||| | Sbjct 448034 GGTAAGGTTTGAATAGAACCGTTGTTGGAGATAATGTTGTTCTTCATA---TCATCGTTC 448090 Query 130718 AAT---CCAAGCTGTACAAGATCTTTTACCAAATGATTAT----TAATGATTTGAAAATC 130770 | || | | || | ||| || ||| | ||| | | |||||||| || Sbjct 448091 CAGATACCTAAATCCACCAAATC----ACGTAATAAGTATGGGTTGACAATTTGAAATTC 448146 Query 130771 ACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTT 130830 |||||||| || | |||| |||||| || ||| | ||||| || |||| ||||| Sbjct 448147 ACCAGCCAAAACTCTTCTAGAGTAAATATTTGAAGTGTATGGTTCGAAACATTCATTGTT 448206 Query 130831 GCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAG 130890 || || ||||| | || | || || ||||| || ||||||| || || | | Sbjct 448207 CCCTAAAATTTGAGAAGTGGAAGCAGTTGGCATCGGAGCAACTAATAAGGAGTTTCTGAT 448266 Query 130891 ACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGAC 130950 |||||| | | | ||| ||||||| |||||| ||||||| | || ||| | Sbjct 448267 ACCGTGTTTGGCCAAGTTTTGCTTCAAAGTATCCCAGTCCCATA---ATTCAG--TTGGC 448321 Query 130951 ATTGTT--CCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGAT 131008 || || ||||| |||||||||| | || ||| || ||| ||| | | | Sbjct 448322 TTTCTTTCCCACAAGTCAAATTGTAAGACACCCTTAGATGCTGGAGAACCTTCATATGTT 448381 Query 131009 TCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATG 131068 | ||| ||||||| ||||| || || ||||||| ||| |||| |||||| Sbjct 448382 TGGTACGGGCCTTCGATTTCAGCCAATTCAATGGATGCTTCCACAGCACCGTGGTAAATG 448441 Query 131069 GTTTCGGCAATTTGTTTATTTAATTGTTTCGCTT 131102 ||||| |||||| | ||||||| ||| |||| Sbjct 448442 GTTTCAAAAATTTGGGTGTTTAATTCTTTAGCTT 448475 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 |||| | ||| | | || | ||| | ||||| |||||||||| |||||| || ||||| Sbjct 448987 TTCGTTTGGAGAGAATAATGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAATAAATC 449046 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttt 131727 || | |||||| || || | |||||||||| | || |||||| | || | | || Sbjct 449047 AGGAATCCATAAGGCCGGGAATAAATCTCTAGCTCTATTTTCTTCTTTGCCGTGATTCTT 449106 Query 131728 tttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGC 131787 | | | || || ||||| || || ||||||||||| |||||||| || | || | || Sbjct 449107 TCTGATATCTATGAAGTCGAATATATCCGCATGCCAAGGTTCCAAGTAAAGAGCAAAGGC 449166 Query 131788 GCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAA 131844 || | | ||||| ||||||| |||| |||| | ||||||| | || || | Sbjct 449167 ACCAGGTCTCTTGTTACCACCTTGATCCACATAACGAGCGGTGTTGTTAAAAACACGAAC 449226 Query 131845 CATGGG 131850 ||| || Sbjct 449227 CATTGG 449232 >seq141 Length=295507 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || ||||| ||||| || || || ||||| |||||||| || | | ||||| || | || Sbjct 197348 AAGACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGC-CATC 197406 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | || |||||||| |||| | | ||||||||| ||||| | ||| || || || Sbjct 197407 TTCTAATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGCGGAATACCTTCCTTGTC 197466 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 |||||| || | | | || | ||||||| | |||||||||| || || | Sbjct 197467 TTGAATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGT 197526 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || | ||||| || |||||||||||| Sbjct 197527 CTTACCTGTTAATGTTTTAACGAAGATTTGCATA 197560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933400474616