Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20psychrophila_20[genbank_20GCA_5F900186205.1_202017-06-20] 193 sequences; 11,241,723 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq101 152 1e-31 seq141 147 5e-30 seq103 96.9 7e-15 >seq101 Length=125820 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||| ||||| |||||||| |||| | || | ||||| ||| Sbjct 105265 ACCAAGTGTAAAGTGGATTCCTTTTGAATGTTGTAATCAGATAAGGTTCTACCATCTTCT 105324 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || || || ||||| || | |||||| ||| |||||||| || ||||||||| Sbjct 105325 AATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTGTCTTGG 105384 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || |||||||||| ||| ||||| | || || |||||| Sbjct 105385 ATCTTAGACTTGACATTGTCAATGGTGTCCGAAGATTCAACTTCTAAGGTAATGGTCTTA 105444 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || |||||||| ||||| || |||||||| Sbjct 105445 CCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105476 >seq141 Length=295507 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||| |||||||| ||||| |||| | || | |||||| ||| Sbjct 196895 ACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGCCATCTTCT 196954 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||| || || | |||||||| |||||||| ||||||||||| Sbjct 196955 AATTGCTTACCGGCAAAAATTAATCTCTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGA 197014 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || ||| | || || ||||| || | || ||||| | || || |||||| Sbjct 197015 ATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGTCTTA 197074 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 197075 CCTGTCAAAGTCTTGACGAAAATTTGCAT 197103 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||| |||||||| ||||| |||| | || | |||||| ||| Sbjct 197123 ACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGCCATCTTCT 197182 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||| || || | ||||| || ||||||||| ||||||||||| Sbjct 197183 AATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGCGGAATACCTTCCTTGTCTTGA 197242 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || ||| | || || ||||| || | || ||||| | || || |||||| Sbjct 197243 ATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGTCTTA 197302 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 197303 CCTGTCAAAGTCTTGACGAAAATTTGCAT 197331 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||||| ||| ||| |||||||| ||||| |||| | || | |||||| ||| Sbjct 197351 ACCAAGTGTAATGTGGATTCCTTTTGGATATTGTAATCAGATAATGTTCTGCCATCTTCT 197410 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||| || || | ||||| || ||||||||| ||||||||||| Sbjct 197411 AATTGCTTACCGGCAAAAATTAATCTCTGTTGATCTGGCGGAATACCTTCCTTGTCTTGA 197470 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || ||| | || || ||||| || | || ||||| | || || |||||| Sbjct 197471 ATCTTGGACTTGACGTTGTCAATGGTGTCTGATGACTCAACTTCTAAGGTAATGGTCTTA 197530 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105 || || || || |||||||| || ||||| || || Sbjct 197531 CCTGTTAATGTTTTAACGAAGATTTGCATATTTAT 197565 >seq103 Length=904190 Score = 96.9 bits (106), Expect = 7e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 230169 ACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCC--TTGCCGTCTTA 230226 || |||| |||| | |||||||| ||| || ||||||| | || | || | ||| Sbjct 561603 ACTGAAGCTGTTGAGATCGAAAAGGAATTCTTTGTCGACGCTTTACCAATCTCCTTATTA 561544 Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286 || ||||| | | | ||| | |||||| | ||||| || |||||| | | || | Sbjct 561543 --GGTATGAACTGTAACTTAATGTGTCAATATGTTGAATTTGTTGCTGATAGATTATTGG 561486 Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346 | |||||||| || | || || || ||| || ||||| |||| ||| ||||| || Sbjct 561485 TTGCGCTAGGTAACAAAAAGGTCTACAACGTCACTAACCCATTCGATTTCATGGAAAACA 561426 Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406 |||| | || || || ||||||||||||||| | ||||| ||||| || | | | | Sbjct 561425 TTTCTTTAGCCGGTAAGACCAACTTCTTCGAAAAGAGAGTCAGTGATTACCAGAAGGCTG 561366 Query 230407 GTGT 230410 |||| Sbjct 561365 GTGT 561362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046736611610222