Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq442 223 5e-53 seq93 154 2e-32 seq100 129 9e-25 >seq442 Length=162164 Score = 223 bits (246), Expect = 5e-53 Identities = 442/648 (68%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 205332 TTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAAC 205391 ||| |||||| ||||| | | ||| | ||||| ||||||| ||| || ||| | | Sbjct 129587 TTTGGGAAATTC-TTTGGAATTCTTTCGAGTTGTTCTTTTAATGCATCAACATGGTCTAA 129645 Query 205392 ATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATG 205451 || | |||||||| ||| ||| | || ||||| || | | || || | ||| Sbjct 129646 GTAGACATGTGCATCACCCATAGTGTGGATAAACTCCCCACAATCCATATCAGCCACATG 129705 Query 205452 TGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCAT 205511 |||||||| | || ||||| |||| |||| |||||| || ||||| || ||||| Sbjct 129706 AGCAATCATTTTGGTTAATAATGCATAAGAGGCAATATTAAAAGGAACACCCAATCCCAT 129765 Query 205512 ATCAGCTGATCTTTGATACATTTGACATGT-AAGATA--TTTATTATT--------AATT 205560 |||| ||||||||||||| ||||| || || |||| ||| | || Sbjct 129766 ATCACAAGATCTTTGATACAACAAACATGACAACTTAGGTTTAGCATTCTCTGGGAAGTT 129825 Query 205561 A-CATGAAATTGT-ACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAG 205618 | ||| |||||| | |||||| ||||| || |||| | |||| || || | |||| || Sbjct 129826 AACATAAAATTGACAGAAAACA-TGACATGGAGGTAAAGCCATCTTGTCGAAATCTGGAG 129884 Query 205619 GATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAA 205678 | ||||| || | | ||||| ||||| | || ||| | |||| ||| || || | Sbjct 129885 GGTTCCATGCACTCATGATTATTCTTCTATCATATGGGTTAGTCTTTAATTTTTTAATTA 129944 Query 205679 TATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAG 205738 ||| | |||||||||| | ||||| ||||||| | ||| || |||||| || Sbjct 129945 TATCTTGTAATTGATCATAACCTTGCCCAGTATAATCAGCATCACAATTTTTATATTCAG 130004 Query 205739 CACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCAT 205798 |||||||||| | |||||| || ||||| ||||| || ||||||||||| | | | Sbjct 130005 CACCAAAATGTCTCCATTGGAATCCATATACTGGTCCCAAATCACCTTCACGACGGTGAG 130064 Query 205799 TAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctt 205858 | || || ||| | || ||||| |||||||| | ||||| || | || ||| | Sbjct 130065 TTAATCCCAATTTGTCTAAATATTCACGGGATCCATTACCTTCCCATATTTTGACTCCCT 130124 Query 205859 tattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAA 205918 | || ||| || || | || |||||||||| ||||||||||||||||| | || || Sbjct 130125 TGTTGGTTAATATTTTAGCATCGGTTGATCCAGCAATAAACCATAATAATTCATGAATAA 130184 Query 205919 TTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 | ||| | | || | | || || || || || || |||| |||| Sbjct 130185 TACCTTTGGAGAATACTTTCTTGGTAGTCAACAAAGGGAATGTGTCAT 130232 >seq93 Length=17569 Score = 154 bits (170), Expect = 2e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || ||| |||| ||||| | | Sbjct 17569 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17510 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| ||||||||||||||||| |||||||||||| Sbjct 17509 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17450 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| || || |||| ||| ||||| || Sbjct 17449 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17390 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| |||||||| || || |||||||| | || |||||||||| ||| || Sbjct 17389 ATCCAAAAGGAATCAACCTTACACTTGGTTTTGAGATTGAGAGGTGGTATGCAAATTT 17332 Score = 147 bits (162), Expect = 3e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || ||| |||| ||||| | | Sbjct 17341 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17282 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| ||||||||||||||||| |||||||||||| Sbjct 17281 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17222 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | ||||| || || ||||||||||| || || |||| ||| ||||| || Sbjct 17221 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACAAC 17162 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||||| |||||||| || || ||||| || | || |||||||| || || Sbjct 17161 ATCCAAAAGGAATCAACCTTACACTTGGTCTTGAGATTGAGAGGTGGTTTTTAA 17108 >seq100 Length=74788 Score = 129 bits (142), Expect = 9e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| |||| || |||||||| || | || | ||| | Sbjct 22641 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCCTCC 22582 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || |||||||||||||||||||| |||||||||||| Sbjct 22581 GACACCATCGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGTATTCCACCTGATCAA 22522 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || |||||||| || || || |||| || || || || Sbjct 22521 CAAAGATTGATCTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTGTCCGACTACAAC 22462 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||| || ||||| ||||| || | || |||||||| ||| || Sbjct 22461 ATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGGTAAGAA 22406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451174524800