Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq442 262 5e-65 seq21 102 1e-16 seq154 87.8 2e-12 >seq442 Length=162164 Score = 262 bits (290), Expect = 5e-65 Identities = 429/615 (70%), Gaps = 21/615 (3%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||||| || | | ||| ||||| || | ||| ||||| || | || || || Sbjct 129616 TTGTTCTTTTAATGCATCAACATGGTCTAAGTAGACATGTGCATCACCCATAGTGTGGAT 129675 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| || || | ||||||| | | |||||||| | | ||||||||||||||||| Sbjct 129676 AAACTCCCCACAATCCATATCAGCCACATGAGCAATCATTTTGGTTAATAATGCATAAGA 129735 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATA--ACAT---TGA 6984 || | ||||||||| ||||| ||||||||||| ||||||||||| ||| ||| Sbjct 129736 GGCAATATTAAAAGGAACACCCAATCCCATATCACAAGATCTTTGATACAACAAACATGA 129795 Query 6985 CAAGATAAAAT----ATTGTCTA------TAGCATAAAATTGACACAATACATGACATGG 7034 ||| || | ||| ||| || ||||||||||||| || ||||||||||| Sbjct 129796 CAACTTAGGTTTAGCATTCTCTGGGAAGTTAACATAAAATTGACAGAAAACATGACATGG 129855 Query 7035 AGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATC 7094 ||||||| | || || | ||| | || ||||| ||| |||| | || | |||||| Sbjct 129856 AGGTAAAGCCATCTTGTCGAAATCTGGAGGGTTCCATGCACTCATGATTATTCTTCTATC 129915 Query 7095 ATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTC 7154 || ||| || || ||||||||| | || || |||||||||||| ||| || || Sbjct 129916 ATATGGGTTAGTCTTTAATTTTTTAATTATATCTTGTAATTGATCATAACCTTGCCCAGT 129975 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||||| || || ||||||| |||| | ||| ||||||||||||||||| || ||||| | Sbjct 129976 ATAATCAGCATCACAATTTTTATATTCAGCACCAAAATGTCTCCATTGGAATCCATATAC 130035 Query 7215 AGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATT---T 7271 || || ||||||||||| ||| ||| | ||||| ||| | ||||| ||| Sbjct 130036 TGGTCCCAAATCACCTTCACGACGGTGAGTTAATCCCAATTTGTCTAAAT---ATTCACG 130092 Query 7272 TGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGA 7331 ||||||| | | ||||| || | || || || | ||| || || || || || Sbjct 130093 GGATCCATTACCTTCCCATATTTTGACTCCCTTGTTGGTTAATATTTTAGCATCGGTTGA 130152 Query 7332 TCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGT 7391 ||| || |||||||| | ||| | | || || | || | | | || ||||| Sbjct 130153 TCCAGCAATAAACCATAATAATTCATGAATAATACCTTTGGAGAATACTTTCTTGGTAGT 130212 Query 7392 GAATAAAGGGAATGT 7406 || ||||||||||| Sbjct 130213 CAACAAAGGGAATGT 130227 >seq21 Length=54338 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | ||| | | ||| | || |||| ||||| |||||||||||| Sbjct 15904 GTCAAAGTTAGAATGAGAACCACAAAAGTCCCACAAATTGGTGACAAGTTTGCTTCTAGA 15845 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || ||| | | |||| | || ||||||||||| |||| | | Sbjct 15844 CATGGTCAAAAGGGTACTATTGGGGTTACTTATAGACATGAAGATATGCCATTTAGTGCA 15785 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||| | || || ||| | |||||||||||||||||| ||||| ||| ||||| Sbjct 15784 GAAGGTGTTGTTCCAGATTTAATTATTAACCCACATGCTATTCCATCTCGTATGAC 15729 >seq154 Length=15437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 19350 CTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTG 19409 ||| || ||| ||| |||||||||| ||| |||| | |||||||| |||| Sbjct 6063 CTAGAAGACCGGAATTAGGTGATAAATTTTCTTCCAGACACGGACAAAAAGGTGTCTGTG 6004 Query 19410 GTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTA 19469 |||| ||| || |||||||||||||| || | | | ||||||| || ||| ||| Sbjct 6003 GTATTATTGTTCAACAAGAAGATATGCCATTCAATGATTATGGTATTTCTCCAGATATTA 5944 Query 19470 TTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 |||| ||||| |||| ||| ||| ||| |||||| || Sbjct 5943 TTATGAACCCCCATGGTTTCCCATCTCGTATGACGGTT 5906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595868193867600