Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq93 141 6e-29 seq127 131 1e-25 seq100 116 2e-21 >seq93 Length=17569 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||||||||||| | ||| ||||| || ||| || | |||||||| || ||||||||| Sbjct 17341 TACCACCTCTCAATCTCAAAACCAAGTGTAAGGTTGAT-TCCTTTTGGATGTTGTAATCA 17399 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || ||| | |||| ||||||||||| || || || || | | ||||||||| | Sbjct 17400 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGT 17459 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | |||||||| || ||||| || ||||| | || ||| || | |||| Sbjct 17460 GGAATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCA 17519 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 17520 ACTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17569 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| | ||| ||||| || ||| || | |||||||| || |||||||||| Sbjct 17114 ACCACCTCTCAATCTCAAGACCAAGTGTAAGGTTGAT-TCCTTTTGGATGTTGTAATCAG 17172 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | |||| ||||||||||| || || || || | | ||||||||| | | Sbjct 17173 ATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTG 17232 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||| || ||||| || ||||| | || ||| || | ||||| Sbjct 17233 GAATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCAA 17292 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||| |||||||| ||||| ||||| ||||| || ||||| Sbjct 17293 CTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17341 >seq127 Length=13859 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4590 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4531 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||| ||| Sbjct 4530 TAATCCATTCATGCGCGTCACTAATTAGATGTCGA 4496 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12615 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12556 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||| ||| Sbjct 12555 TAATCCATTCATGCGCGTCACTAATTAGATGTCGA 12521 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||| |||||||||||||||| |||||| || | |||||||||||||||||| ||| Sbjct 2625 TCTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCTCTGTACTTGTTCGCTATCGGACTCT 2566 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||| ||| Sbjct 2565 CGCCAATATTTAGCTTTA 2548 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||| |||||||||||||||| |||||| || | |||||||||||||||||| ||| Sbjct 10650 TCTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCTCTGTACTTGTTCGCTATCGGACTCT 10591 Query 20006 CGGTAATATTTAGCCTTA 20023 || |||||||||| ||| Sbjct 10590 CGCCAATATTTAGCTTTA 10573 >seq100 Length=74788 Score = 116 bits (128), Expect = 2e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || | || |||||||| || ||||| || || Sbjct 22414 ACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGA 22473 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | |||| || |||||||| || ||||| || | | ||||||||| | || Sbjct 22474 CAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGG 22533 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || ||| || || ||||| | || || || ||| || Sbjct 22534 AATACCTTCTTTATCTTGAATCTTAGATTTGACATTGTCGATGGTGTCGGAGGATTCGAC 22593 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||| || |||||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 22594 TTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTTT 22645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945114011641