Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq100 87.8 1e-12 seq93 87.8 1e-12 >seq100 Length=74788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| ||||| || ||| ||||| || || || |||| | Sbjct 22415 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 22474 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | || ||||||||||| || |||| || || | || ||||| | || Sbjct 22475 AAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 22534 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || | || || | | || |||| | ||||| | | ||| | Sbjct 22535 ATACCTTCTTTATCTTGAATCTTAGATTTGACATTGTCG--ATGGTGTCGGAGGATTCGA 22592 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||| |||||||| ||||| || || ||||| || ||||| Sbjct 22593 CTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 22641 >seq93 Length=17569 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || || || ||| ||||| || || ||||| | Sbjct 17115 CCACCTCTCAATCTCAAGACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAGAT 17174 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | || || |||||||| || | ||||| || | || ||||| | || Sbjct 17175 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGA 17234 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || ||||| ||| | | |||| || ||||| | ||| | Sbjct 17235 ATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATA--GTGTCAGAAGATTCAA 17292 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 17293 CTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17341 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| | || ||||| || || || ||| ||||| || || ||||| | Sbjct 17343 CCACCTCTCAATCTCAAAACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCAGAT 17402 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | || || |||||||| || | ||||| || | || ||||| | || Sbjct 17403 AAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGA 17462 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||| || ||||| ||| | | |||| || ||||| | ||| | Sbjct 17463 ATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATA--GTGTCAGAAGATTCAA 17520 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 17521 CTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367436647263