Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq154 208 4e-49 seq510 187 1e-42 >seq154 Length=15437 Score = 208 bits (230), Expect = 4e-49 Identities = 276/383 (72%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| | | ||||||||||||||||||||| | |||| ||||||||||| | ||| | Sbjct 12161 ACTCTTTGCATAAATAAATCTGGAATCCATAAACCATAGAATAAATCTCTAGTTCTTAAA 12220 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 ||||| |||| ||||| ||| | | ||| || | || |||||||| ||||| ||| Sbjct 12221 TCTTCACTTCCATGATTTTTTCTCATATCCAAAATTTCTAAAATATCACCATGCCAAGGT 12280 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || | ||| || ||||| || | ||| || ||||||||||| |||||||||||| Sbjct 12281 TCAACATAAATTGCAAATGCTCCGGGACGTTTACCACCACCTTGATCAACGTATCTTGCA 12340 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGA 26164 || | ||||||||| ||||||||||| |||||| ||||| ||| || || | | | Sbjct 12341 GTATTATTGAAAACACGTAACATTGGAACCAATCCATTTGAAGTTCCATTGGTACCAACA 12400 Query 26165 ATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTT 26224 || | || || | ||||||||||| ||| |||||||||| || ||||||| ||| Sbjct 12401 ATATATGAACCAATGGATCTAATATCATGAACATGAATACCAATACCACCAGAGGCTTTG 12460 Query 26225 GAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATT 26284 ||||| ||| | || || ||| | |||| || | || ||| ||||||| Sbjct 12461 GAAATCAAAGCAGATTCATGAAGTGTTTTATAAATCCCATCAATAGAATCTTCTTTCATG 12520 Query 26285 CCTAATAAAAAACAAGAAGATAA 26307 | | |||||||||||| || || Sbjct 12521 GCGATTAAAAAACAAGATGACAA 12543 Score = 105 bits (116), Expect = 3e-18 Identities = 346/524 (66%), Gaps = 18/524 (3%) Strand=Plus/Plus Query 24664 TGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAA 24723 ||||||||| ||||| | || | || ||| | | ||||||||| ||||||||||| Sbjct 10924 TGTAAATTGAATAGCTCTTGAAGCAGCTTGAGTACGTAAATAATACATACCAGTTTTCAA 10983 Query 24724 TTTCTTCTTCC-AACCGTAAAAATGCATTGATGTTAGTTTTGCAA-TGTTTGCTGATTCT 24781 | || |||| || | |||||||| ||||| ||| ||| |||| | | | | Sbjct 10984 TC-CTCGTTCCCAAGCATAAAAATGACAACTTGTTAATTTACCAAATGTTGGTTCACG-T 11041 Query 24782 AAAAACAAGTTCATCGATTGAGCTTGGCAAACAA--AACGTTG-TCTATCTGCAGCTAAG 24838 ||| | |||| ||| ||| | ||| ||| | |||||| || || | | Sbjct 11042 AAATGAATATTCAAACTTTGCAGTTG---ATCAATGAACTTACCTCTATCAGCTGCCATG 11098 Query 24839 TCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTT 24898 ||||| || ||| || || || || ||||||||||| | || || || || Sbjct 11099 TCAATAATTACTTTTTGGGAAATCTCCCAAACTGTTTTGTATAATGCCTTGATATCTGTG 11158 Query 24899 GGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTC 24958 || ||| | | |||| | |||| |||||||||||| ||| |||| | || || | Sbjct 11159 GGTATATTAGGAATACTCTGAATTGATCCATTTTCCATCAT--GATTTTGTTTC-TAATG 11215 Query 24959 GGTG---TCCAAAGATT-AATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAAT 25014 | || |||| | | || | |||| |||| | || | | |||||| | | Sbjct 11216 GCTGAGTTCCAGATACCCAAATCCATCAA-ATCTTTTATTAGATATTTATTAACCACCTG 11274 Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 | |||||||| || ||||| | | | ||||||||||| |||||||||||||||| Sbjct 11275 GTACTCTCCAGATAATACTCTACGGTTGTACAAGTTTGAAGTATATGGTTCAAAACATTC 11334 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||| ||| | |||||| || || || || || |||||| ||| | || | ||||| Sbjct 11335 ATTAAATCCAAGGATTTGTGAGGTTGAAGCAGTAGGCATTGGTGCAACTACCAATGAATT 11394 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| || ||| | || ||| || ||||| | |||||||| Sbjct 11395 TCTTAACCCAAACTTTTGAATACTTTCTTTTAGTAGATCCCAAT 11438 >seq510 Length=157725 Score = 187 bits (206), Expect = 1e-42 Identities = 297/424 (70%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 25889 TTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGA 25948 |||||| ||||||| ||| || || ||||| |||||| ||| |||||| |||||||| Sbjct 72839 TTTGGAGAGAATAAGGTCCAGTCGGCGTTTTGTTCAACTCTCTTCATAAACAAATCTGGG 72780 Query 25949 ATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTT 26008 ||||| | || || |||||||| ||||| ||||||||||| ||||| |||||| | Sbjct 72779 ATCCATAAGGCTGGGAACAAATCTCTAGCTCTGATTTCTTCTTTACCGTGGTTCTTTCTA 72720 Query 26009 AGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCT 26068 | ||| | ||||||||| ||||| |||||||||||| || || | |||||| |||| Sbjct 72719 ATATCAATGAAATCAAATATATCACTGTGCCATGGTTCCAAGTACAAGGCAAAAGCACCT 72660 Query 26069 TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATT 26128 |||||| |||||||| || ||||| | ||||| | || |||||| | | ||| Sbjct 72659 GGTCTTTTGTTACCACCTTGGTCAACGTAACGGGCAGTGTTGTTAAAAACTCTGACCATA 72600 Query 26129 GGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATA 26188 |||| | ||| | || || || || | | ||| | | || || || | ||| Sbjct 72599 GGAATGATACCATTGGATGTACCATTAGTACCAGCAATGTATGCACCAGTAGAACGAATG 72540 Query 26189 TCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGAAA 26246 | |||| || | ||| || |||||||| | || ||||| ||||| || | ||| Sbjct 72539 TTGTGAATGTGCAAACCAATACCACCAGCACTCTTGGAAATTAAAGCACATGATTTCAAA 72480 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 |||||| |||| |||| || ||| | ||||| | | || ||||| || || | Sbjct 72479 --GTATCGTAAATACCTTCAATAGAATCGTCCTTCATAGCAAGCAAGAAACATGAGGACA 72422 Query 26307 ATTG 26310 ||| Sbjct 72421 TTTG 72418 Score = 132 bits (146), Expect = 2e-26 Identities = 345/518 (67%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 24665 GTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAAT 24724 |||||||| |||| | || | || |||||| | || ||||| ||||| ||||| Sbjct 74039 GTAAATTGAATAGCGGCAGAAGCAGCTTGAGTTCTCAAGTAGTACATACCAGTCTTCAAA 73980 Query 24725 TTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAA 24784 ||||||||||||||||| ||||| ||| | ||| | || ||| | || ||| Sbjct 73979 CCTTTCTTCCAACCGTAAAAGTGCATACTTGTCAATTTACCCATAGTTGGTTCTT-TAAT 73921 Query 24785 AACAAG-TTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAAT 24843 || |||| ||||||| ||| || ||| |||||| ||||| | ||||| Sbjct 73920 GTGAATATTCAAAGATTGAGATTGATCAATGAAAGCAGCTCTATCAGCAGCCATATCAAT 73861 Query 24844 GATC-GTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAA 24902 ||| | ||| | || || || || | || ||||| |||| || ||| ||| | Sbjct 73860 GATGTGCTTTTGT-GAGATTTCCCAAACAGTCTTGTACAAAGCTTTGATTTCATCTGGGA 73802 Query 24903 TACTTGCAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCT-CATATTCGGT 24961 | ||| | | |||||| || ||||| | | |||| | | ||| |||| Sbjct 73801 TGTTTGGCAAACTTTGAATAGAACCATTGT-TGGAAATAATATTACTCTTCATAGCATCA 73743 Query 24962 GTCCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCT 25021 |||| | | | | | | |||| | | ||||| | || | || ||||| Sbjct 73742 TTCCAGATACCCAAGTCAACTAAATCTTTCAACAAGTATGGGTTGACAATTTGGAATTCA 73683 Query 25022 CCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTT 25081 |||| ||| |||||||| | | ||| |||||| | ||||| ||||||||||| || Sbjct 73682 CCAGCCAAGACTCTTCTGGAGTAAATGTTGGAAGTGTAAGGTTCGAAACATTCATTGTTA 73623 Query 25082 CCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAA 25141 || || ||||||||||||||||| ||||||||| || | || | || ||||||||| Sbjct 73622 CCCAAAATTTGAGAAGTAGATGCAGTTGGCATTGGAGCAACCAACAAGGAGTTTCTCAAA 73563 Query 25142 CCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 |||| ||| | || | |||||| || |||||||||| Sbjct 73562 CCATGTTTGGCCATGTTTTGTTTCAAAGTATCCCAATC 73525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038424114325