Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq510 374 1e-98 seq93 143 4e-29 seq100 123 4e-23 >seq510 Length=157725 Score = 374 bits (414), Expect = 1e-98 Identities = 646/929 (70%), Gaps = 28/929 (3%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||||| || || ||| | || ||||| || || || || || |||| || || Sbjct 114886 AGCTTTTTGATAATCAGAAACTCTCTTTTCGAAAAAGTTAGTTTTACCGGCCAAGGAGAT 114827 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTA----ATT 17975 | ||| |||||||||||||| || |||||| ||| | ||||| | Sbjct 114826 ATTTTCCATGAAATCAAATGGATTGGTAACATTATAAACTTTCT----TATTACCCAAAG 114771 Query 17976 CGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATAC 18035 | ||||||||||||| || ||| |||| |||||||| |||| |||| ||||||||| Sbjct 114770 CAAATAATAATCTATCAGCAACATATTCAACATATTGACACATTAAATTAGAATTCATAC 114711 Query 18036 CTAGTAGTCTGAAA--GGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTC 18093 ||| || |||| || ||||||||| ||| | ||||||| || || ||||||| | Sbjct 114710 CTAATA--AAGAAACTGGAAGAGCATCAGTAAAATATTCTTTTTCAATTTCAACAG---C 114656 Query 18094 TTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGT-GATTATAATATA 18152 || | ||| || || | | |||| | | | | ||| ||| || | ||| Sbjct 114655 TTCAACAATGATTTTTTCAACA-ATTTCTGGAGATGGTCTATTTTGTAAATGGGAGAATA 114597 Query 18153 ATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACG 18212 ||||||| ||||||||||| ||||||||||||||||| | |||||||| || || | Sbjct 114596 ATAAACAAGCAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTGGAGAAAG 114537 Query 18213 TTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || || ||||| | |||||| ||||||| |||||| || || || || || | || Sbjct 114536 TCAAACCTGGCATCAAACCTCTCTTTTTTAACCAAAAGATAGAAGCAAATGAACCACTAA 114477 Query 18273 AGAATATACCCTCAA-CGCACGCGAACGCTATTAATCTTTCAGCA---AAACTGTATTTA 18328 |||| ||||| |||| ||| || || || | |||||||||||| ||| | |||| Sbjct 114476 AGAAAATACCTTCAATAGCA-GCAAAAGCAACCAATCTTTCAGCATATAAAGCATCTTTA 114418 Query 18329 TTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | || | |||||||| ||||| || ||| ||||| || ||| | || Sbjct 114417 T--CT-TGGATCCATTTAATGGCCCAATCAGCTTTTTTGGTAATACATGGAATATTTTCA 114361 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || |||||||| || ||| ||||| | |||||| | |||||| || || || ||| Sbjct 114360 ATGGCATTAAATAAGAAATCAGCTTCTTGTGGATCTTTAACATAAGTTTCAATCAATAAA 114301 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||||||||| ||| ||||||| || ||||||| |||||| ||| |||| Sbjct 114300 GAATACATTTCAGAATGAATGTTTTCCATCATAATTTGAAAACCATAAAATGATTTAGCT 114241 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 || || ||||| || | |||| |||| || ||||| |||||||||||||| || Sbjct 114240 TCTGGCAGTTGAACTTCAGCAGAAAAATTTTCAACTAAATTTTCATTAACTATACCATCT 114181 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GA 18625 | | || ||||| |||||||| ||| || | | |||||||||| | | | Sbjct 114180 GATGCAGCAAAAAAGGCCAAAACTCTAGAAATAAAGTATCTTTCATTATCAGTTAATTTA 114121 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 |||||||| ||||| | |||||| || |||||||||||| | ||||||||| || | | Sbjct 114120 TTGTTCCAATCATCCAAATCTTTACTTAAATCAACTTCTTCAGCTGTCCAAAAGGAAGCT 114061 Query 18686 TCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGT 18745 || || | ||| || | || |||| || | | || || ||||| | | ||| || Sbjct 114060 TCAGCTTTTTTATAAAAATTCCAAATTTCATGGTATTTAATTGGAAACATAACATAACGA 114001 Query 18746 TTATAATTTTTTATTAACATAGGTTCTTC 18774 | |||| | |||| | |||||||| Sbjct 114000 CGTTTGTTTTCTTTTAATAATGGTTCTTC 113972 >seq93 Length=17569 Score = 143 bits (158), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || ||||| ||||| |||||||| ||| |||| Sbjct 17341 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17282 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| |||||||||||||| || || || || ||| Sbjct 17281 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17222 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| | Sbjct 17221 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACA-- 17164 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || | || || || || ||||| ||||| ||| Sbjct 17163 ACATCCAAAAGGAATCAACCTTACACTTGGTCTTGAGATTGAGAGGTGGT 17114 Score = 143 bits (158), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || ||||| ||||| |||||||| ||| |||| Sbjct 17569 ATGCAAATTTTCGTCAAAACTTTGACCGGTAAAACAATTACTTTAGAAGTTGAATCTTCT 17510 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| |||||||||||||| || || || || ||| Sbjct 17509 GACACTATCGACAATGTCAAATCCAAAATCCAAGATAAAGAAGGTATTCCACCTGATCAA 17450 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || | ||||| ||||||||||| ||||| | Sbjct 17449 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGTAGAACTTTATCTGATTACA-- 17392 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || | || || || || ||||| ||||| ||| Sbjct 17391 ACATCCAAAAGGAATCAACCTTACACTTGGTTTTGAGATTGAGAGGTGGT 17342 >seq100 Length=74788 Score = 123 bits (136), Expect = 4e-23 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || ||||| ||||||||||| || ||||||||| Sbjct 22644 AAGATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACTATTACCTTGGAAGTCGAATCC 22585 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || || || ||| ||| || |||||||||||||| || || || || Sbjct 22584 TCCGACACCATCGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGTATTCCACCTGAT 22525 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | ||||| |||||||| || || || Sbjct 22524 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGACGGTAGAACTTTGTCCGACTAC 22465 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || | || || || || ||||| ||||| |||| Sbjct 22464 A--ACATCCAAAAGGAATCTACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTG 22413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867325167600