Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20sojae_20[genbank_20GCA_5F001442715.1_202015-11-12] 511 sequences; 11,747,307 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq510 336 4e-87 seq93 176 8e-39 seq100 161 2e-34 >seq510 Length=157725 Score = 336 bits (372), Expect = 4e-87 Identities = 621/917 (68%), Gaps = 14/917 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || ||||||||| | |||||||||||||| ||||| || | || || || Sbjct 114883 TTTTTGATAATCAGAAACTCTCTTTTCGAAAAAGTTAGTTTTACCGGCCAAGGAGATATT 114824 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATA 38949 | ||| |||||||||||||| | ||||||| ||| | | || | | | || ||| Sbjct 114823 TTCCATGAAATCAAATGGATTGGTAACATTATAAACTTTCT-TATTACCCAAAGCAAATA 114765 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||| ||||||||||||| ||||||| | | |||||||||| |||| Sbjct 114764 ATAATCTATCAGCAACATATTCAACATATTGACACATTAAATTAGAATTCATACCTAATA 114705 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || ||| | |||||| || | |||||||||| ||||| ||||||| ||| | Sbjct 114704 AAGAAACTGGAAGAGCATCAGTAAAATATTCTTTTTCAATTTCAACAGCTTCAACAATGA 114645 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 | | || | |||| | || | | ||||| || || | ||| |||||| | Sbjct 114644 T--TTTTTCAACAATTTCTGGAGATGGTCTATTTTGTA-AATGGGAGAATAATAAACAAG 114588 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 ||||||| |||||||||||||| || ||| | || |||||||| ||||| || |||| Sbjct 114587 CAAAATCAGTATGTAAACCTTCATCTCTACAAATTAATTCATTGGAGAAAGTCAAACCTG 114528 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 |||| || ||||||||||| | |||||| || || ||||| || | |||||| |||| Sbjct 114527 GCATCAAACCTCTCTTTTTTAACCAAAAGATAGAAGCAAATGAACCACTAAAGAAAATAC 114468 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATC---ATCTAAAA 39306 | || | | ||||| || | | |||| | || | ||| ||| |||| | Sbjct 114467 CTTCAATAGCAGCAAAAGCAACCAATCTTTCAGCATA---TAAAGCATCTTTATCTTGGA 114411 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || ||||||||||| |||||||| | ||| | || |||||||| || || |||| Sbjct 114410 TCCATTTAATGGCCCAATCAGCTTTTTTGGTAATACATGGAATATTTTCAATGGCATTAA 114351 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 |||| || ||||||||||| Sbjct 114350 ATAAGAAATCAGCTTCTTGTGGATCTTTAACATAAGTTTCAATCAATAAAGAATACATTT 114291 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486 ||||||| | |||||| |||||||| ||||||| | ||||||| | Sbjct 114290 CAGAATGAATGTTTTCCATCATAATTTGAAAACCATAAAATGATTTAGCTTCTGGCAGTT 114231 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 ||||||| | | | || |||||||||||| ||| || |||||||| ||||| || | Sbjct 114230 GAACTTCAGCAGAAAAATTTTCAACTAAATTTTCATTAACTATACCATCTGATGCAGCAA 114171 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA---ATTTTCCCAAG 39603 | || || ||||| |||||| | | |||||||||| |||| ||| | |||| Sbjct 114170 AAAAGGCCAAAACTCTAGAAATAAAGTATCTTTCATTATCAGTTAATTTATTGTTCCAAT 114111 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 || | ||| || |||||| |||||||| ||||||||| || ||| | | ||||| Sbjct 114110 CATCCAAATCTTTACTTAAATCAACTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTTT 114051 Query 39664 TATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTAtttt 39723 |||| | | | || ||| | || ||| ||||| | ||||| || | |||| Sbjct 114050 TATAAAAATTCCAAATTTCATGGTATTTAATTGGAAACATAACATAACGACGTTTGTTTT 113991 Query 39724 tttCTAATATCGGTTCT 39740 || ||||| |||||| Sbjct 113990 CTTTTAATAATGGTTCT 113974 >seq93 Length=17569 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || ||||| || | || || || || ||||| Sbjct 17340 ATACCACCTCTCAATCTCAAAACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATCA 17399 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||||| || |||| || |||||||||||||| ||||| ||||| ||||| |||||| Sbjct 17400 GATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGGT 17459 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| ||||| || || ||||| Sbjct 17460 GGAATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTCA 17519 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||| |||||||| || || ||||| | ||| || ||||| Sbjct 17520 ACTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17569 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| | || || || || ||||| || | || || || || ||||| Sbjct 17111 AAAACCACCTCTCAATCTCAAGACCAAGTGTAAGGTTGATTCCTTTTGGATGTTGTAATC 17170 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||||| || |||| || |||||||||||||| ||||| ||||| ||||| ||||| Sbjct 17171 AGATAAAGTTCTACCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGATCAGG 17230 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || |||||||||||||| ||||| ||| ||||| ||||| || || ||||| Sbjct 17231 TGGAATACCTTCTTTATCTTGGATTTTGGATTTGACATTGTCGATAGTGTCAGAAGATTC 17290 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||| |||||||| || || ||||| | ||| || ||||| Sbjct 17291 AACTTCTAAAGTAATTGTTTTACCGGTCAAAGTTTTGACGAAAATTTGCAT 17341 >seq100 Length=74788 Score = 161 bits (178), Expect = 2e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || || |||| || || || || Sbjct 22406 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAGGTAGATTCCTTTTGGATGTTG 22465 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || |||| |||||||||||||||||||| || ||||| ||||| Sbjct 22466 TAGTCGGACAAAGTTCTACCGTCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGA 22525 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || |||||||||||||| || ||| ||| ||||| || || || || Sbjct 22526 TCAGGTGGAATACCTTCTTTATCTTGAATCTTAGATTTGACATTGTCGATGGTGTCGGAG 22585 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| | ||||| |||||||||||||| || || | ||| || ||||| || Sbjct 22586 GATTCGACTTCCAAGGTAATAGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATCTT 22644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905130218443800